##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553125_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 791275 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.770304887681274 31.0 31.0 34.0 30.0 34.0 2 31.988091371520646 33.0 31.0 34.0 30.0 34.0 3 32.1381542447316 34.0 31.0 34.0 30.0 34.0 4 35.80168967805125 37.0 35.0 37.0 35.0 37.0 5 35.5846665192253 37.0 35.0 37.0 33.0 37.0 6 35.5967255378977 37.0 35.0 37.0 33.0 37.0 7 35.750910871694416 37.0 35.0 37.0 35.0 37.0 8 35.81031499794635 37.0 35.0 37.0 35.0 37.0 9 37.4164152791381 39.0 37.0 39.0 35.0 39.0 10 37.01537518561815 39.0 37.0 39.0 33.0 39.0 11 37.01429591482102 39.0 37.0 39.0 33.0 39.0 12 36.99825345170769 39.0 37.0 39.0 33.0 39.0 13 36.9887940349436 39.0 37.0 39.0 33.0 39.0 14 38.14688824997631 40.0 37.0 41.0 33.0 41.0 15 38.172904489589584 40.0 37.0 41.0 33.0 41.0 16 38.06650153233705 40.0 37.0 41.0 33.0 41.0 17 38.02816340715933 40.0 37.0 41.0 33.0 41.0 18 37.96879719440144 40.0 37.0 41.0 33.0 41.0 19 38.06100407570061 40.0 37.0 41.0 33.0 41.0 20 37.97605130959527 40.0 37.0 41.0 33.0 41.0 21 37.95010963318695 40.0 37.0 41.0 33.0 41.0 22 37.921970237907175 40.0 37.0 41.0 33.0 41.0 23 37.78497235474393 40.0 37.0 41.0 33.0 41.0 24 37.72196518277464 40.0 37.0 41.0 33.0 41.0 25 37.68354617547629 40.0 37.0 41.0 33.0 41.0 26 37.672304824492116 40.0 37.0 41.0 33.0 41.0 27 37.66086758712205 40.0 37.0 41.0 33.0 41.0 28 37.49816814634609 40.0 36.0 41.0 32.0 41.0 29 37.33785725569492 40.0 36.0 41.0 32.0 41.0 30 37.40812233420745 40.0 36.0 41.0 32.0 41.0 31 37.325488610154494 39.0 36.0 41.0 32.0 41.0 32 37.33001421756027 40.0 36.0 41.0 32.0 41.0 33 37.23112950617674 39.0 36.0 41.0 31.0 41.0 34 37.225951786673406 39.0 36.0 41.0 31.0 41.0 35 37.14755552747149 39.0 36.0 41.0 31.0 41.0 36 37.03623013490885 39.0 35.0 41.0 31.0 41.0 37 36.9930011689994 39.0 35.0 41.0 31.0 41.0 38 36.90914915800449 39.0 35.0 41.0 31.0 41.0 39 36.82445673122492 39.0 35.0 41.0 31.0 41.0 40 36.729809484692424 39.0 35.0 41.0 31.0 41.0 41 36.6820763956905 39.0 35.0 40.0 31.0 41.0 42 36.62454266847809 39.0 35.0 40.0 30.0 41.0 43 36.56087201036302 39.0 35.0 40.0 30.0 41.0 44 36.51918233231178 39.0 35.0 40.0 30.0 41.0 45 36.36721367413352 39.0 35.0 40.0 30.0 41.0 46 36.240140279927964 38.0 35.0 40.0 30.0 41.0 47 36.103396417174814 38.0 35.0 40.0 30.0 41.0 48 36.02919086284793 38.0 35.0 40.0 30.0 41.0 49 35.86721304224195 38.0 35.0 40.0 29.0 41.0 50 35.7605080408202 38.0 34.0 40.0 29.0 41.0 51 34.556926479416134 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 3.0 11 6.0 12 6.0 13 8.0 14 13.0 15 24.0 16 54.0 17 92.0 18 160.0 19 381.0 20 833.0 21 1380.0 22 1940.0 23 2390.0 24 3008.0 25 3687.0 26 4511.0 27 5829.0 28 7539.0 29 9803.0 30 13237.0 31 17597.0 32 23310.0 33 31378.0 34 46930.0 35 59335.0 36 72752.0 37 108319.0 38 170379.0 39 206310.0 40 57.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.701273261508323 31.20849262266595 22.04239992417301 26.047834191652715 2 22.10053394837446 29.10227165018483 21.461565195412465 27.335629206028244 3 20.458626899624026 28.701652396448768 22.020157341000285 28.81956336292692 4 18.961296641496318 28.97033269091024 21.008751698208588 31.059618969384857 5 17.437300559224038 33.56683833054248 19.182079555148338 29.813781555085146 6 19.91204069381694 34.30728886923004 22.80484028940634 22.97583014754668 7 85.67173233073204 4.283845692079239 5.524501595526208 4.519920381662507 8 87.76430444535718 3.034975198255979 3.9898897349214875 5.210830621465357 9 79.4406495845313 6.626899624024516 8.421977188714417 5.510473602729771 10 33.306246248143815 28.83283308584247 14.997819974092447 22.863100691921268 11 22.685791918106855 28.321885564437142 28.755363179678366 20.236959337777638 12 21.065116426021294 22.19127357745411 37.770307415247544 18.973302581277053 13 25.753372721241035 24.237591229345046 29.21247353954061 20.796562509873308 14 19.636409592113992 29.83223278885343 29.422893431487157 21.108464187545415 15 19.152127894853244 32.242519983570816 28.855454803955645 19.749897317620295 16 19.243120280559857 31.005529051214815 27.771508009225617 21.979842658999715 17 17.531452402767687 30.229945341379423 29.783703516476574 22.454898739376322 18 19.987235790338378 29.376386212126 29.24293071308963 21.393447284445987 19 19.698840478973807 32.98840478973808 29.543331964234937 17.76942276705317 20 19.46087011468832 30.967362800543423 28.71694417238002 20.854822912388236 21 19.86313228649964 31.880572493760074 28.875169820858744 19.38112539888155 22 17.889861299800955 31.104736027297715 29.116173264667783 21.889229408233547 23 18.403083630848947 30.39954503807147 27.698840478973807 23.498530852105777 24 16.568070519098924 31.41676408328331 28.60522574326246 23.409939654355313 25 17.557612713658337 31.88878708413636 28.688761808473668 21.864838393731638 26 19.672427411456194 30.630564595115477 28.85090518467031 20.846102808758015 27 17.383716154307923 30.084989415816242 28.16555559066064 24.36573883921519 28 19.006919212663107 29.863953745537263 30.649774098764652 20.479352943034975 29 19.627815866797256 32.1345929038577 26.709045527787435 21.528545701557615 30 19.05393194527819 30.3021073583773 28.397586174212503 22.246374522132 31 19.063031183848853 33.253040978168144 26.09320400619254 21.590723831790466 32 19.981675144545196 29.162301349088498 27.274209345676283 23.581814160690026 33 18.356070898233863 31.079207607974475 28.74196707844934 21.822754415342327 34 16.866828852168968 29.66579254999842 30.033047928975385 23.43433066885722 35 19.808789611702633 29.471422703864015 29.32305456383685 21.396733120596505 36 19.079586742914916 31.01526018135288 28.70329531452403 21.201857761208174 37 18.668604467473383 32.13977441471044 25.796973239392116 23.394647878424063 38 19.153644434615018 32.71353195791602 27.460617358061356 20.6722062494076 39 18.73229913746801 31.269912483017915 27.321601213231812 22.676187166282265 40 19.79387697071183 32.900950996808945 26.437079397175445 20.868092635303782 41 18.879277116046886 30.039240466335976 29.472180973744905 21.60930144387223 42 20.87251587627563 29.323939212031213 28.439038261034405 21.364506650658747 43 19.06442134529715 27.66244352469116 30.312091245142337 22.961043884869355 44 19.928343496256044 26.977220308994976 28.578433540804397 24.516002653944582 45 20.433603993554705 28.558339388960853 29.50402830874222 21.50402830874222 46 17.481659347256013 29.032005307889165 31.47439259423083 22.01194275062399 47 18.977599443935418 30.693374616915737 28.430065400777227 21.898960538371615 48 19.06935009952292 28.7728033869388 30.521879245521465 21.63596726801681 49 20.476067106884457 28.00783545543585 28.919528608890715 22.59656882878898 50 18.550187987741303 27.756216233294367 28.08530536159995 25.608290417364383 51 18.856023506366306 26.15007424725917 31.441534232725665 23.55236801364886 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1138.0 1 896.0 2 654.0 3 477.0 4 300.0 5 310.0 6 320.0 7 369.5 8 419.0 9 474.0 10 529.0 11 659.5 12 790.0 13 867.0 14 944.0 15 1193.5 16 1443.0 17 1893.0 18 2343.0 19 2915.5 20 3488.0 21 4122.5 22 4757.0 23 6874.5 24 8992.0 25 11171.0 26 15057.0 27 16764.0 28 18391.0 29 20018.0 30 23616.0 31 27214.0 32 29706.0 33 32198.0 34 34562.0 35 36926.0 36 39442.5 37 41959.0 38 41878.0 39 41797.0 40 41686.5 41 41576.0 42 43037.0 43 44498.0 44 49392.0 45 54286.0 46 58632.0 47 62978.0 48 66787.5 49 70597.0 50 67704.5 51 64812.0 52 55697.0 53 46582.0 54 41141.5 55 35701.0 56 30399.5 57 25098.0 58 23193.0 59 21288.0 60 19547.5 61 17807.0 62 16321.0 63 14835.0 64 12384.0 65 9933.0 66 8656.5 67 7380.0 68 6695.0 69 6010.0 70 5317.5 71 4625.0 72 3815.5 73 3006.0 74 2485.5 75 1463.0 76 961.0 77 685.5 78 410.0 79 327.0 80 244.0 81 206.0 82 168.0 83 123.5 84 79.0 85 50.5 86 22.0 87 38.0 88 54.0 89 31.0 90 8.0 91 6.5 92 5.0 93 3.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 791275.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.267743291015048 #Duplication Level Percentage of deduplicated Percentage of total 1 74.9297594426486 22.67954723667599 2 9.686964492609224 5.864051090629476 3 3.665866533492996 3.3287252152466764 4 1.9661894086656042 2.3804846513201277 5 1.2809804237560503 1.9386193313531905 6 0.9323338800389953 1.6931785525521796 7 0.755150691452878 1.5999695092449757 8 0.5866381362260967 1.4204970009608808 9 0.5072829637562958 1.381887947059277 >10 4.720390144732798 31.01819879447633 >50 0.7855202661299233 16.506958309058323 >100 0.17703641963800054 7.793106970318253 >500 0.0033641124871829084 0.6809486230352559 >1k 0.002523084365387181 1.7138267680691068 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT 4813 0.60825882278601 No Hit GCCCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTC 2031 0.2566743546807368 No Hit AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT 1969 0.24883889924488958 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC 1914 0.24188809200341221 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT 1677 0.21193643170831886 No Hit CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC 1061 0.1340873906037724 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 863 0.10906448453445389 No Hit GCCCCTGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAG 824 0.10413573030867904 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.527566269628132E-4 0.0 0.0 0.6871188903984077 0.0 2 2.527566269628132E-4 0.0 0.0 1.0018008909671101 0.0 3 2.527566269628132E-4 0.0 0.0 1.38005118321696 0.0 4 2.527566269628132E-4 0.0 0.0 2.9974408391520013 0.0 5 2.527566269628132E-4 0.0 0.0 3.2383179046475625 0.0 6 2.527566269628132E-4 0.0 0.0 4.51840384190073 0.0 7 2.527566269628132E-4 0.0 0.0 5.427948564026413 0.0 8 2.527566269628132E-4 0.0 0.0 6.2961675776436765 0.0 9 2.527566269628132E-4 0.0 0.0 7.5662696281318125 0.0 10 2.527566269628132E-4 0.0 0.0 9.423904457995008 0.0 11 2.527566269628132E-4 0.0 0.0 11.207987109412025 0.0 12 3.791349404442198E-4 0.0 0.0 12.019967773530063 0.0 13 3.791349404442198E-4 0.0 0.0 12.392404663359768 0.0 14 3.791349404442198E-4 0.0 0.0 12.710751635019431 0.0 15 3.791349404442198E-4 0.0 0.0 12.97930555116742 0.0 16 3.791349404442198E-4 0.0 0.0 13.630533000537108 0.0 17 3.791349404442198E-4 0.0 0.0 14.512400872010364 0.0 18 3.791349404442198E-4 0.0 0.0 15.772392657419987 0.0 19 3.791349404442198E-4 0.0 0.0 16.216486050993648 0.0 20 3.791349404442198E-4 0.0 0.0 16.821459037629143 0.0 21 3.791349404442198E-4 0.0 0.0 17.337967204827653 0.0 22 3.791349404442198E-4 0.0 0.0 17.9153897191242 0.0 23 3.791349404442198E-4 0.0 0.0 18.51050519730814 0.0 24 3.791349404442198E-4 0.0 0.0 18.95535686076269 0.0 25 3.791349404442198E-4 0.0 0.0 19.34156898676187 0.0 26 3.791349404442198E-4 0.0 0.0 19.676850652428044 0.0 27 3.791349404442198E-4 0.0 0.0 20.201447031689362 0.0 28 3.791349404442198E-4 0.0 0.0 20.635809295124957 0.0 29 3.791349404442198E-4 0.0 0.0 21.02783482354428 0.0 30 3.791349404442198E-4 0.0 0.0 21.66768822470064 0.0 31 3.791349404442198E-4 0.0 0.0 22.049603488041452 0.0 32 3.791349404442198E-4 0.0 0.0 22.40535844049161 0.0 33 3.791349404442198E-4 0.0 0.0 22.776910682126946 0.0 34 3.791349404442198E-4 0.0 0.0 23.113582509241414 0.0 35 3.791349404442198E-4 0.0 0.0 23.467568165302833 0.0 36 3.791349404442198E-4 0.0 0.0 23.800069508072415 0.0 37 3.791349404442198E-4 0.0 0.0 24.13105431108022 0.0 38 3.791349404442198E-4 0.0 0.0 24.50829357682222 0.0 39 3.791349404442198E-4 0.0 0.0 24.873147767843037 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTAGGT 20 7.0319534E-4 45.0 24 ACGTGTA 25 3.8896993E-5 45.0 27 TCGTACG 20 7.0319534E-4 45.0 12 CCGACAG 40 6.8102963E-9 45.0 1 GTCCCGT 20 7.0319534E-4 45.0 27 TAGTGCG 20 7.0319534E-4 45.0 1 TATCCCG 35 1.2112832E-7 45.0 1 CGGACCA 20 7.0319534E-4 45.0 6 TAGCGCG 65 0.0 41.538464 1 CCCCTGG 1525 0.0 41.459015 2 ATCTACG 60 3.6379788E-12 41.249996 1 GGCGAGT 55 6.002665E-11 40.90909 8 CGCTACG 45 1.9270374E-8 40.0 1 AAGGGTC 210 0.0 39.642857 5 ATAGGGC 485 0.0 39.43299 4 CACTGCG 80 0.0 39.375 1 TGCGCGA 40 3.4564073E-7 39.375 17 ACGTGCG 40 3.4564073E-7 39.375 1 ATAGGGA 420 0.0 39.107143 4 GGGAATG 3070 0.0 39.06352 7 >>END_MODULE