SRR3553119_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553119_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1286408
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT	8509	0.6614542198120658	No Hit
AATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	5870	0.45630935131000433	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGT	5429	0.42202784808552185	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCC	5115	0.3976187959030105	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	1919	0.14917506731923308	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1597	0.12414412845691258	No Hit
AACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTG	1461	0.1135720549001561	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTT	1453	0.11295016822034688	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCT	1392	0.10820828228680171	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCAC	25	3.8910654E-5	45.000004	11
CCGAACG	35	6.248869E-6	38.57143	1
CGGGTAG	215	0.0	37.67442	6
GCGGGAC	610	0.0	37.62295	5
CGTATCT	30	1.1399977E-4	37.499996	20
CGCCTAT	30	1.1399977E-4	37.499996	13
TCGTGTC	30	1.1399977E-4	37.499996	44
AGGGCGT	390	0.0	36.923077	6
ACGGGCG	435	0.0	36.724136	5
CTAACCG	80	0.0	36.5625	1
TAGGGAC	625	0.0	36.36	5
TAACCGG	260	0.0	36.346153	2
ACACGGG	1065	0.0	36.33803	3
CACGGGC	830	0.0	36.3253	4
ACGGGCC	560	0.0	36.160717	5
CCCATAG	50	4.879803E-8	36.000004	1
TAACTCG	25	0.0021072014	36.000004	1
ACGGGAT	1225	0.0	36.0	5
TACGGGA	820	0.0	35.945118	4
ACGGGTA	415	0.0	35.78313	5