SRR3553117_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553117_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1082968
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT	7887	0.728276366430033	No Hit
AATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT	7359	0.6795214632380643	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT	6372	0.5883830362485318	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC	5859	0.5410132155336076	No Hit
AACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTG	1725	0.15928448486012514	No Hit
CCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGC	1664	0.15365181612014392	No Hit
AATGACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT	1642	0.15162036182047853	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCT	1560	0.1440485776126349	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1395	0.12881267036514465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGCAT	35	1.2118471E-7	45.0	5
CTAGCGT	25	3.8906557E-5	45.0	29
TAGCGCG	120	0.0	43.124996	1
GTACTAG	55	6.184564E-11	40.909092	1
TACGCGG	145	0.0	40.34483	2
CGCATAG	45	1.9281288E-8	40.0	1
AGTACGG	110	0.0	38.86364	2
TTAGCGG	225	0.0	38.0	2
GTAGGGC	285	0.0	37.894737	4
CTAACGG	190	0.0	37.894737	2
TGCGGGA	745	0.0	37.75168	4
TAGGGCG	155	0.0	37.74194	5
GTAACGG	155	0.0	37.74194	2
TGACGGG	455	0.0	37.582417	3
TACTACG	90	0.0	37.5	1
CGGCACG	30	1.1398784E-4	37.499996	1
CGTGTTC	30	1.1398784E-4	37.499996	33
TATAGCG	60	1.5643309E-10	37.499996	1
TATCGGC	30	1.1398784E-4	37.499996	32
AACGGGA	1275	0.0	37.411766	4