SRR3553114_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553114_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	961414
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	4153	0.43196791392677863	Illumina Single End Adapter 1 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCC	2174	0.22612526965490412	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGT	2008	0.2088590347134533	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCT	1970	0.20490652310035012	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	1099	0.11431079638948465	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGCG	35	1.211647E-7	45.000004	9
CTATACG	35	1.211647E-7	45.000004	1
CGCGACG	60	0.0	45.000004	1
ACCGCAC	20	7.03271E-4	45.0	10
CCGTACG	20	7.03271E-4	45.0	1
ACGGAGT	20	7.03271E-4	45.0	32
TAGTGCG	20	7.03271E-4	45.0	1
TCGCACG	45	1.927765E-8	40.0	1
CGGGAAT	1565	0.0	39.824284	6
CCTCGCG	40	3.457426E-7	39.375	1
CTAACCG	160	0.0	39.375	1
AGGGCGT	200	0.0	39.375	6
TTACGGG	460	0.0	38.641308	3
AGCACGG	1240	0.0	38.46774	2
ATGCGGG	395	0.0	38.16456	3
ACTGCGG	130	0.0	38.07692	2
CGTACAG	65	9.094947E-12	38.07692	1
TAGACGG	155	0.0	37.741936	2
ACGGGAA	1705	0.0	37.741936	5
GCACGGG	1525	0.0	37.62295	3