SRR3553113_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553113_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	983189
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGCT	4377	0.4451839880226487	Illumina Single End Adapter 1 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCC	2399	0.24400191621346454	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGT	2279	0.23179673491058178	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCT	2190	0.2227445587776104	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGCAGATCGTATGCCGTCTTCTGC	1204	0.12245865240559038	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	20	7.03279E-4	45.0	28
CGCATTG	20	7.03279E-4	45.0	1
CTATACG	20	7.03279E-4	45.0	1
GACTACG	50	1.0804797E-9	40.5	1
AGTACGG	165	0.0	39.545452	2
CCTCGCG	40	3.457535E-7	39.375	1
CTCAACG	75	0.0	39.0	1
ACCGGGT	145	0.0	38.793106	4
CATAGCG	70	0.0	38.571426	1
TACTCGG	35	6.247368E-6	38.571426	2
TCGCGCG	35	6.247368E-6	38.571426	1
AGCACGG	1130	0.0	38.23009	2
CGGGAAT	1455	0.0	38.195877	6
ACGGGAA	1625	0.0	38.076923	5
TTGGACG	30	1.1398017E-4	37.500004	15
TGCGCGT	30	1.1398017E-4	37.500004	32
ACGTCCG	30	1.1398017E-4	37.500004	19
CACGGGA	1820	0.0	37.335163	4
ACTACGG	175	0.0	37.285713	2
ATTGCGG	145	0.0	37.241383	2