SRR3553112_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553112_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	925765
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGCT	7926	0.856156800051849	TruSeq Adapter, Index 22 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTGC	1664	0.17974323937500336	TruSeq Adapter, Index 20 (95% over 21bp)
AATCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCT	1664	0.17974323937500336	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1385	0.1496060015230647	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGT	1139	0.12303338320200051	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCC	1102	0.11903668857647458	No Hit
TACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCT	1024	0.1106112242307713	No Hit
ACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCTG	1014	0.10953103649414268	TruSeq Adapter, Index 22 (95% over 21bp)
AACCTGTCTCTTATACACATCTGACGCGCCTGTTTTCGTATGCCGTCTTCT	990	0.10693858592623398	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGCG	35	1.2115925E-7	45.0	1
CGACTAG	65	0.0	41.538464	1
TTCACGG	170	0.0	41.02941	2
CCCAACG	55	6.002665E-11	40.909092	1
ACGACAG	50	1.0804797E-9	40.5	1
CTATCCG	40	3.457244E-7	39.375	1
CGGCACG	40	3.457244E-7	39.375	1
CAGAACG	70	0.0	38.571426	1
TAGTACG	35	6.2469735E-6	38.571426	1
AATGCGG	195	0.0	38.076923	2
ACGGGAC	530	0.0	37.783016	5
GCGAAGG	280	0.0	37.767857	2
GTTCGCA	30	1.13975024E-4	37.500004	14
CTAGGGA	705	0.0	37.340427	4
GTACGGG	285	0.0	37.105263	3
ACTAGGG	790	0.0	37.025314	3
TAGGGCA	395	0.0	37.025314	5
CCACGGG	650	0.0	36.692307	3
CGAGTTA	80	0.0	36.5625	25
CAACGGG	745	0.0	36.543625	3