SRR3553108_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553108_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	711655
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCC	10934	1.5364186298136036	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGT	10896	1.531078963823763	No Hit
AATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT	9141	1.284470705608757	No Hit
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT	5754	0.808537844882703	Illumina Single End Adapter 1 (95% over 21bp)
AATGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTT	2579	0.36239469967891746	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT	2128	0.29902129543107264	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTAT	1774	0.24927809120992617	No Hit
AACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG	1728	0.2428142850116981	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGGCGATC	1720	0.24169014480331058	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1156	0.16243826011199247	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC	1116	0.156817559070055	No Hit
AATGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC	780	0.10960367031778039	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTCGG	20	7.031474E-4	45.0	2
CGCTCTA	35	1.211065E-7	45.0	32
CACTACG	35	1.211065E-7	45.0	1
CGTATAG	30	2.1643318E-6	44.999996	1
TGCGTAG	30	2.1643318E-6	44.999996	1
TAGGGTG	115	0.0	41.08696	5
TAGGGAC	335	0.0	40.97015	5
AATACGG	95	0.0	40.263157	2
TACACGC	280	0.0	40.17857	35
CATACCG	40	3.4557524E-7	39.375	1
TGGGCCG	75	0.0	39.0	6
TACGGCT	1400	0.0	38.410717	6
CACTAGG	190	0.0	37.894737	2
GTCTTAC	315	0.0	37.857143	31
TAAGGGA	345	0.0	37.826084	4
ACACGCG	300	0.0	37.5	36
AACGCAC	30	1.1394851E-4	37.499996	30
CCATAGG	175	0.0	37.285717	2
CTAGGGT	140	0.0	36.964283	4
ATAGGGC	375	0.0	36.600002	4