##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553107_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 732415 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.63818736645208 31.0 31.0 34.0 30.0 34.0 2 31.845756845504255 33.0 31.0 34.0 30.0 34.0 3 31.976245707693042 33.0 31.0 34.0 30.0 34.0 4 35.65094516087191 37.0 35.0 37.0 33.0 37.0 5 35.40694415051576 37.0 35.0 37.0 33.0 37.0 6 35.421156038584684 37.0 35.0 37.0 33.0 37.0 7 35.472753834916 37.0 35.0 37.0 33.0 37.0 8 35.61958179447444 37.0 35.0 37.0 35.0 37.0 9 37.36404224380986 39.0 37.0 39.0 34.0 39.0 10 36.88754326440611 39.0 37.0 39.0 33.0 39.0 11 36.867625594778914 39.0 37.0 39.0 33.0 39.0 12 36.72861151123339 39.0 35.0 39.0 32.0 39.0 13 36.79133141729757 39.0 35.0 39.0 33.0 39.0 14 37.85458107766772 40.0 37.0 41.0 33.0 41.0 15 37.92410723428657 40.0 37.0 41.0 33.0 41.0 16 37.74375593072234 40.0 37.0 41.0 33.0 41.0 17 37.73048203545804 39.0 37.0 41.0 33.0 41.0 18 37.599883945577304 39.0 36.0 41.0 32.0 41.0 19 37.63718929841688 39.0 36.0 41.0 32.0 41.0 20 37.69968528771257 39.0 36.0 41.0 33.0 41.0 21 37.74993958343289 39.0 37.0 41.0 33.0 41.0 22 37.7081326843388 39.0 36.0 41.0 33.0 41.0 23 37.59651700197293 39.0 36.0 41.0 32.0 41.0 24 37.46197442706662 39.0 36.0 41.0 32.0 41.0 25 37.50759610330209 39.0 36.0 41.0 32.0 41.0 26 37.4297358737874 39.0 36.0 41.0 32.0 41.0 27 37.409891932852275 39.0 36.0 41.0 32.0 41.0 28 37.31342886205225 39.0 36.0 41.0 32.0 41.0 29 37.17324877289515 39.0 36.0 41.0 31.0 41.0 30 37.22285043315607 39.0 36.0 41.0 31.0 41.0 31 37.13360867814013 39.0 36.0 41.0 31.0 41.0 32 37.09092795751043 39.0 36.0 41.0 31.0 41.0 33 37.024574865342736 39.0 36.0 40.0 31.0 41.0 34 36.96955687690722 39.0 35.0 40.0 31.0 41.0 35 36.816565744830456 39.0 35.0 40.0 31.0 41.0 36 36.81877077886171 39.0 35.0 40.0 31.0 41.0 37 36.76889195333247 39.0 35.0 40.0 31.0 41.0 38 36.73136268372439 39.0 35.0 40.0 31.0 41.0 39 36.63387287262003 39.0 35.0 40.0 30.0 41.0 40 36.50282012247155 39.0 35.0 40.0 30.0 41.0 41 36.44005106394599 39.0 35.0 40.0 30.0 41.0 42 36.33101042441785 38.0 35.0 40.0 30.0 41.0 43 36.30227808005024 38.0 35.0 40.0 30.0 41.0 44 36.25334407405637 38.0 35.0 40.0 30.0 41.0 45 36.02743526552569 38.0 35.0 40.0 29.0 41.0 46 35.776010868155346 38.0 34.0 40.0 28.0 41.0 47 35.717272311462764 38.0 34.0 40.0 28.0 41.0 48 35.659508611920835 38.0 34.0 40.0 28.0 41.0 49 35.50839483079948 38.0 34.0 40.0 28.0 41.0 50 35.41394701091594 38.0 34.0 40.0 28.0 41.0 51 33.908872701951765 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 3.0 11 3.0 12 5.0 13 6.0 14 11.0 15 20.0 16 48.0 17 106.0 18 179.0 19 395.0 20 685.0 21 1220.0 22 1669.0 23 2355.0 24 2962.0 25 3674.0 26 4587.0 27 5932.0 28 7844.0 29 10283.0 30 13800.0 31 18454.0 32 24897.0 33 33872.0 34 48506.0 35 60115.0 36 72561.0 37 102003.0 38 151689.0 39 164491.0 40 39.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.18529795266345 36.710334987677754 19.636408320419434 24.467958739239364 2 19.28687970617751 35.005563785558735 20.379293160298463 25.32826334796529 3 19.819091635206814 27.059249196152457 27.509130752373995 25.612528416266734 4 24.069414198234607 27.252445676290083 20.182410245557506 28.495729879917807 5 17.136596055514975 35.292423011544 20.04136998832629 27.529610944614735 6 20.624509328727566 31.654594731129208 25.394755705440218 22.326140234703004 7 76.99733074827796 9.477823365168653 7.938122512509985 5.586723374043404 8 79.75560303926052 3.480130800161111 5.273512967375054 11.490753193203307 9 75.042564666207 6.301755152475032 10.998136302506092 7.657543878811876 10 34.18826758053836 25.865390523132376 16.92210017544698 23.024241720882287 11 23.51603940388987 25.018602841285336 29.32490459643781 22.14045315838698 12 22.32928053084658 20.98195695063591 38.7453834233324 17.943379095185108 13 24.679041253933903 25.095471829495576 27.905627274154682 22.319859642415842 14 18.451834001215158 26.570045670828694 33.81962412020508 21.15849620775107 15 17.839476253217097 31.403097970412947 27.016240792446904 23.74118498392305 16 18.483100428036018 29.423755657653107 29.944635213642538 22.148508700668337 17 16.82597980653045 30.068608644006474 30.157629212946212 22.947782336516866 18 17.923308506789184 29.348388550207194 29.034632005079086 23.693670937924537 19 18.19023367899347 32.46465460155786 32.29603435210912 17.049077367339553 20 19.254247933207267 33.07059522265383 28.59949618727088 19.07566065686803 21 17.970139879713003 30.075162305523506 29.122150693254508 22.83254712150898 22 16.90653522934402 32.41645788248466 29.63975341848542 21.0372534696859 23 19.868517165814463 28.441252568557445 26.46218332502748 25.228046940600617 24 15.802106729108498 34.02360683492282 27.34051050292525 22.833775933043423 25 17.815446160987964 29.340333007925835 28.092270092775273 24.751950738310928 26 20.103493238123196 32.01463651072138 26.038926018718893 21.84294423243653 27 16.001037663073532 29.37214557320645 30.823645064615008 23.803171699105015 28 20.47991917150796 31.219185844091125 26.658656635923624 21.642238348477296 29 19.285923963872943 34.835851259190484 26.181468156714434 19.696756620222143 30 20.419980475550066 29.188643050729436 27.386659202774382 23.004717270946117 31 23.70513984557935 33.110326795600855 23.05591775154796 20.128615607271833 32 22.014977847258727 29.095116839496733 25.49811240894848 23.39179290429606 33 21.67241249837865 29.590327887877777 26.52143934791068 22.215820265832896 34 21.62407924469051 30.583480676938624 26.18720261054184 21.60523746782903 35 18.3188492862653 33.51870182888116 27.73168217472335 20.430766710130186 36 21.348006253285366 31.130165275151384 29.096755254875994 18.42507321668726 37 22.71458121420233 29.755671306567997 26.984291692551356 20.545455786678318 38 24.836192595727834 28.518531160612493 26.360328502283544 20.284947741376133 39 24.067366179010534 26.562126663162278 27.43867889106586 21.93182826676133 40 21.689752394475807 30.469883877309993 24.391772424103824 23.448591304110376 41 20.754490282148783 28.342674576572023 30.100557743902023 20.80227739737717 42 21.37940921472116 31.82335151519289 25.60064990476711 21.196589365318843 43 19.535645774595004 27.87053787811555 29.714164783626767 22.87965156366268 44 21.493142548964727 24.850528730296347 28.335165172750422 25.3211635479885 45 24.93081108388004 27.759944840015567 26.820859758470267 20.48838431763413 46 17.95402879515029 26.18105855286962 34.471576906535226 21.393335745444865 47 20.72731989377607 28.759105152133696 26.4258651174539 24.087709836636336 48 20.03659127680345 25.439265989910094 33.303523275738485 21.220619457547976 49 21.454230183707324 25.28252425196098 28.827099390372947 24.436146173958754 50 20.019387915321232 24.538547135162442 27.12546848439751 28.31659646511882 51 19.191032406490855 23.49965525009728 33.37165404859267 23.937658294819194 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1443.0 1 1158.0 2 873.0 3 617.0 4 361.0 5 430.0 6 499.0 7 526.0 8 553.0 9 628.0 10 703.0 11 844.0 12 985.0 13 1118.0 14 1251.0 15 1346.5 16 1442.0 17 1834.0 18 2226.0 19 2479.0 20 2732.0 21 3447.0 22 4162.0 23 5212.0 24 6262.0 25 7844.0 26 10712.5 27 11999.0 28 14374.5 29 16750.0 30 18416.0 31 20082.0 32 21939.0 33 23796.0 34 25960.5 35 28125.0 36 29918.5 37 31712.0 38 32709.5 39 33707.0 40 34095.0 41 34483.0 42 35972.0 43 37461.0 44 55955.0 45 74449.0 46 75791.5 47 77134.0 48 75192.0 49 73250.0 50 66060.5 51 58871.0 52 51508.5 53 44146.0 54 37909.0 55 31672.0 56 27949.5 57 24227.0 58 21869.0 59 19511.0 60 18013.5 61 16516.0 62 15003.5 63 13491.0 64 11102.0 65 8713.0 66 7337.5 67 5962.0 68 5018.0 69 4074.0 70 3350.0 71 2626.0 72 2393.5 73 2161.0 74 1873.0 75 1417.5 76 1250.0 77 1023.0 78 796.0 79 593.5 80 391.0 81 380.5 82 370.0 83 230.5 84 91.0 85 75.5 86 60.0 87 40.5 88 21.0 89 15.5 90 10.0 91 5.5 92 1.0 93 2.0 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 732415.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.57484645433648 #Duplication Level Percentage of deduplicated Percentage of total 1 74.91790012594677 25.153569934099785 2 9.940134949901566 6.674770093566575 3 3.6899364833998805 3.716671525692159 4 1.9769792660717858 2.6550710120706813 5 1.3063537911238456 2.1930313976011737 6 0.9620535211736623 1.938047955255568 7 0.7541802126146955 1.772503938620607 8 0.6190426110443837 1.6627408491605382 9 0.5015418904479729 1.5155272765987506 >10 4.955819436742572 34.90869865648224 >50 0.3244981124300177 6.788132282948406 >100 0.04337553575322062 2.7045090627972423 >500 0.0036828285073489202 0.7777610263904083 >1k 0.0028644221723824934 1.8275529364149816 >5k 4.092031674832134E-4 0.8654154222280839 >10k+ 0.0012276095024496402 4.8459966300728645 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCC 12689 1.7324877289514824 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGT 12196 1.665176163786924 No Hit AATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCT 10387 1.4181850453636258 No Hit CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT 6299 0.8600315394960508 Illumina Single End Adapter 1 (95% over 21bp) AATGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTT 2889 0.3944485025566107 No Hit AATGATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCT 2184 0.29819159902514286 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGGCGATCGTAT 2046 0.27934982216366405 No Hit AACTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG 2009 0.2742980414109487 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGGCGATC 1800 0.24576230688885398 No Hit CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC 1201 0.1639780725408409 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1173 0.16015510332256985 No Hit AATGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC 895 0.12219848036973573 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.9957469467446735 0.0 2 0.0 0.0 0.0 1.39128772622079 0.0 3 0.0 0.0 0.0 2.137722466088215 0.0 4 0.0 0.0 0.0 5.436535297611327 0.0 5 0.0 0.0 0.0 5.8308472655529995 0.0 6 0.0 0.0 0.0 7.76581582845791 0.0 7 0.0 0.0 0.0 9.108224162530806 0.0 8 0.0 0.0 0.0 9.998702921158086 0.0 9 0.0 0.0 0.0 13.037553845838767 0.0 10 0.0 0.0 0.0 15.102503362164892 0.0 11 0.0 0.0 0.0 18.82825993459992 0.0 12 0.0 0.0 0.0 19.77649283534608 0.0 13 0.0 0.0 0.0 20.23743369537762 0.0 14 0.0 0.0 0.0 20.895667073994936 0.0 15 0.0 0.0 0.0 21.27482369967846 0.0 16 0.0 0.0 0.0 22.001460920379838 0.0 17 0.0 0.0 0.0 22.972768171050564 0.0 18 0.0 0.0 0.0 24.342483428111112 0.0 19 0.0 0.0 0.0 24.9417338530751 0.0 20 0.0 0.0 0.0 25.481182116696136 0.0 21 0.0 0.0 0.0 26.112381641555675 0.0 22 0.0 0.0 0.0 26.77198036632237 0.0 23 0.0 0.0 0.0 27.42447929111228 0.0 24 0.0 0.0 0.0 27.957646962446155 0.0 25 0.0 0.0 0.0 28.418724357092632 0.0 26 0.0 0.0 0.0 28.831058894206155 0.0 27 0.0 0.0 0.0 29.28831331963436 0.0 28 1.3653461493825223E-4 0.0 0.0 29.70556310288566 0.0 29 1.3653461493825223E-4 0.0 0.0 30.152577432193496 0.0 30 1.3653461493825223E-4 0.0 0.0 30.748960630243783 0.0 31 1.3653461493825223E-4 0.0 0.0 31.17249100578224 0.0 32 1.3653461493825223E-4 0.0 0.0 31.60052702361366 0.0 33 1.3653461493825223E-4 0.0 0.0 32.00166572230225 0.0 34 1.3653461493825223E-4 0.0 0.0 32.38915095949701 0.0 35 1.3653461493825223E-4 0.0 0.0 32.78878777742127 0.0 36 1.3653461493825223E-4 0.0 0.0 33.1975724145464 0.0 37 2.7306922987650447E-4 0.0 0.0 33.59639002478103 0.0 38 2.7306922987650447E-4 0.0 0.0 34.015824361871346 0.0 39 2.7306922987650447E-4 0.0 0.0 34.438125925875354 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATAG 30 2.1644191E-6 45.000004 1 CACTACG 35 1.2111195E-7 45.0 1 GCACTAG 35 1.2111195E-7 45.0 1 TACGGGT 80 0.0 42.187504 4 ACGGGTA 125 0.0 41.399998 5 ACACTAG 60 3.6379788E-12 41.250004 1 GCGGGTT 150 0.0 40.5 5 CGGGCTA 140 0.0 40.17857 6 TACGGCT 1610 0.0 40.108696 6 AACACGG 230 0.0 40.108692 2 CACGCAG 45 1.9266736E-8 40.0 1 TATGCGG 40 3.4559343E-7 39.375004 2 TGTTCGG 40 3.4559343E-7 39.375004 2 GTACGCG 40 3.4559343E-7 39.375004 1 CGACCGG 35 6.2451854E-6 38.571426 2 CCCGACG 35 6.2451854E-6 38.571426 1 GTACGGG 170 0.0 38.382355 3 CTAGGGT 160 0.0 37.968754 4 CTATGCG 30 1.1395175E-4 37.500004 1 GCGTTGA 30 1.1395175E-4 37.500004 9 >>END_MODULE