SRR3553102_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553102_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	838113
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGCT	5301	0.6324922772943505	No Hit
AATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCT	3435	0.40984926853538844	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGT	3266	0.3896849231547536	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCC	3217	0.3838384561509009	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1667	0.19889919378413173	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCTGC	1178	0.14055383939874455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGTC	25	3.8898987E-5	45.0	14
ATCTACG	35	1.2113924E-7	45.0	1
CCATACG	40	6.8121153E-9	45.0	1
GACTACG	20	7.0321927E-4	45.0	1
GCTAACG	65	0.0	41.538464	1
GTAACGG	85	0.0	39.705883	2
TAGCGCG	40	3.4567347E-7	39.375	1
ATACGTG	40	3.4567347E-7	39.375	13
TCTACGG	110	0.0	38.863636	2
CTAAGGG	440	0.0	38.352272	3
GTACAGG	160	0.0	37.96875	2
GCATAGG	665	0.0	37.894733	2
GGGCACC	405	0.0	37.777775	7
TGGGACG	150	0.0	37.5	6
AGGGCAC	360	0.0	37.5	6
TAGAACC	30	1.1396585E-4	37.499996	36
CCTACCG	120	0.0	37.499996	1
TATACGG	120	0.0	37.499996	2
TAGGGCC	345	0.0	37.173912	5
TGTAGGG	400	0.0	37.125	3