SRR3553096_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553096_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1159491
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCT	4626	0.3989681679288585	TruSeq Adapter, Index 20 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT	3146	0.2713259525084714	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGT	2632	0.22699615607193158	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCC	2612	0.22527126126895336	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1724	0.14868593201672112	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1600	0.13799158423825628	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	25	3.8908263E-5	45.000004	1
CGCGAAT	25	3.8908263E-5	45.000004	11
CGCTAAG	65	0.0	45.000004	1
ACTACCG	100	0.0	45.000004	1
ACGTATA	25	3.8908263E-5	45.000004	42
ATACGTT	25	3.8908263E-5	45.000004	44
ATCGCGC	25	3.8908263E-5	45.000004	1
GATACGT	45	3.8562575E-10	45.0	11
CACGATC	20	7.033312E-4	45.0	35
ATATCCG	35	1.211938E-7	45.0	1
CATACCG	55	1.8189894E-12	45.0	1
TATAGCG	45	3.8562575E-10	45.0	1
TCATACG	45	3.8562575E-10	45.0	1
GCGCTAA	20	7.033312E-4	45.0	15
TATAACG	20	7.033312E-4	45.0	1
TATCGCG	45	3.8562575E-10	45.0	1
GTCGGAC	20	7.033312E-4	45.0	45
CGTACCG	30	2.1655196E-6	44.999996	1
GTGCGAC	30	2.1655196E-6	44.999996	42
TTTCGCG	85	0.0	42.35294	1