SRR3553095_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553095_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1176330
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCTGCT	4931	0.4191850926185679	TruSeq Adapter, Index 20 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGTCTTCT	3415	0.290309692008195	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCC	3069	0.2608961770931626	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCTAGTTGTCGTATGCCGT	2986	0.2538403339199034	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1759	0.14953286917786676	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1580	0.1343160507680668	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCC	25	3.890861E-5	45.000004	42
CGAGTTA	25	3.890861E-5	45.000004	16
CGAAACG	50	2.1827873E-11	45.000004	1
TAACGCG	35	1.2119563E-7	45.000004	1
TTATCGG	25	3.890861E-5	45.000004	2
CCGTATC	25	3.890861E-5	45.000004	41
CGAGGTA	25	3.890861E-5	45.000004	43
CGTAACG	50	2.1827873E-11	45.000004	1
CACCGTA	25	3.890861E-5	45.000004	25
TATCCCG	25	3.890861E-5	45.000004	1
TATCACG	45	3.8562575E-10	45.0	1
GATCGGT	20	7.0333545E-4	45.0	9
TAGCGAA	20	7.0333545E-4	45.0	32
TAACGGT	20	7.0333545E-4	45.0	22
CTAGTAT	20	7.0333545E-4	45.0	43
TTGACGT	20	7.0333545E-4	45.0	39
ACTACGT	20	7.0333545E-4	45.0	22
ACGTCGC	20	7.0333545E-4	45.0	45
TCATACG	45	3.8562575E-10	45.0	1
TATCGCG	20	7.0333545E-4	45.0	1