SRR3553094_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553094_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	967419
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	3569	0.36891977519564945	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT	1576	0.1629076956313655	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1526	0.1577393042725024	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC	1481	0.1530877520495256	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGT	1450	0.14988334940703046	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1219	0.12600538132908284	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	1012	0.10460824110338954	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTAATCG	35	1.2116652E-7	45.000004	9
AATTGCG	30	2.165143E-6	45.000004	1
TAGTGCG	30	2.165143E-6	45.000004	1
CCGTTAG	25	3.8903454E-5	45.000004	40
TGCGTAA	25	3.8903454E-5	45.000004	21
ATCTCGC	20	7.0327334E-4	45.0	11
GGTACGT	20	7.0327334E-4	45.0	8
ACGCATT	20	7.0327334E-4	45.0	22
GCGCGAT	20	7.0327334E-4	45.0	38
CGCGATA	20	7.0327334E-4	45.0	45
CTTGCGA	20	7.0327334E-4	45.0	37
ACTACCG	20	7.0327334E-4	45.0	1
CGAATAT	55	1.8189894E-12	45.0	13
GACGCAT	20	7.0327334E-4	45.0	16
GATTACC	20	7.0327334E-4	45.0	21
TCGGTAC	20	7.0327334E-4	45.0	42
CTTACCG	90	0.0	42.5	1
AACGGGC	350	0.0	42.42857	4
TATACGG	85	0.0	42.35294	2
CGATTGG	75	0.0	42.000004	2