SRR3553093_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553093_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	974822
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT	3814	0.3912509155517623	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCC	1738	0.1782889594202839	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCT	1692	0.17357014921698524	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1578	0.16187570653924513	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGT	1508	0.15469490840379063	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1222	0.12535621887893378	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	996	0.10217249918446648	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCT	20	7.032758E-4	45.000004	13
CGCGAAA	20	7.032758E-4	45.000004	14
ACGATAG	20	7.032758E-4	45.000004	1
CGAATCG	20	7.032758E-4	45.000004	19
CGAATAT	35	1.2116652E-7	45.000004	13
TACTCGA	20	7.032758E-4	45.000004	24
GTAACAC	20	7.032758E-4	45.000004	11
TCGCGAA	20	7.032758E-4	45.000004	16
GACTAAC	35	1.2116652E-7	45.000004	29
CGCATAG	25	3.8903687E-5	45.0	1
CCGTATA	25	3.8903687E-5	45.0	6
GTCCGAA	25	3.8903687E-5	45.0	35
ACCGTAT	25	3.8903687E-5	45.0	5
TCGACAA	25	3.8903687E-5	45.0	44
TGTCGTA	25	3.8903687E-5	45.0	28
TTACGGG	345	0.0	41.086956	3
GTTTACG	50	1.0804797E-9	40.5	11
CGATTAG	50	1.0804797E-9	40.5	1
TCGTTGA	240	0.0	40.312504	24
TTAATCG	240	0.0	40.312504	20