SRR3553090_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553090_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	930550
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCTGCT	4693	0.5043253989576058	Illumina Single End Adapter 2 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCC	2134	0.22932674224920746	No Hit
AATCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGTCTTCT	2008	0.21578636290365913	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCCGT	1942	0.20869378324646715	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1416	0.15216807264520982	No Hit
TGAATGATACCTGTCTCTTATACACATCTGACGCACCATAGATCGTATGCC	1195	0.1284186771264306	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1139	0.12240073075063135	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGT	20	7.0325925E-4	45.000004	39
TTTCGAT	20	7.0325925E-4	45.000004	21
ATATGCG	40	6.8121153E-9	45.000004	1
TCTAGCG	50	2.1827873E-11	45.000004	1
CGTTAGT	20	7.0325925E-4	45.000004	6
ATTCCCG	20	7.0325925E-4	45.000004	1
CCCGTAT	20	7.0325925E-4	45.000004	17
CCCCGTA	20	7.0325925E-4	45.000004	16
TCTACCG	80	0.0	45.000004	1
ATATACG	25	3.8902304E-5	45.000004	1
TCGTAAT	20	7.0325925E-4	45.000004	39
TTACGAA	25	3.8902304E-5	45.000004	15
AACTCGC	20	7.0325925E-4	45.000004	31
TATCGCG	20	7.0325925E-4	45.000004	1
AATTGCG	45	3.8380676E-10	45.0	1
CGTAGCG	45	3.8380676E-10	45.0	1
CATAACG	45	3.8380676E-10	45.0	1
TATAGCG	35	1.2115925E-7	45.0	1
CAATGCG	35	1.2115925E-7	45.0	1
CGACTTA	35	1.2115925E-7	45.0	17