SRR3553088_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553088_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1003106
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCTGCT	3988	0.397565162604949	Illumina Single End Adapter 2 (95% over 22bp)
AACCCCGGGAATGATACCTGTCTCTTATACACATCTGACGCTGCCCAGATC	2189	0.2182222018410816	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1693	0.16877578241980407	No Hit
AACCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTTCT	1495	0.14903709079598765	No Hit
AACCCCGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTGCCCAGA	1491	0.1486383293490419	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1174	0.1170364846785883	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1154	0.11504267744385938	No Hit
AACCCCTGTCTCTTATACACATCTGACGCTGCCCAGATCGTATGCCGTCTT	1116	0.1112544436978744	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATAG	25	3.8904498E-5	45.0	1
TAGACGC	20	7.032858E-4	45.0	16
TAGCGTA	25	3.8904498E-5	45.0	29
CATTCGC	20	7.032858E-4	45.0	12
ACGATAG	40	6.8139343E-9	45.0	1
CGTACCG	20	7.032858E-4	45.0	1
CGTCGAA	25	3.8904498E-5	45.0	27
ACCGTCC	20	7.032858E-4	45.0	26
CGACTTA	25	3.8904498E-5	45.0	30
TAAATCG	20	7.032858E-4	45.0	1
ACGACAT	20	7.032858E-4	45.0	31
AAACTCG	30	2.165225E-6	44.999996	1
GTCGCGA	30	2.165225E-6	44.999996	17
CAACGAA	30	2.165225E-6	44.999996	43
GTATGCG	30	2.165225E-6	44.999996	1
CTAGGTC	30	2.165225E-6	44.999996	29
AACCCCG	1785	0.0	43.109245	1
CCAAACG	85	0.0	42.35294	1
AGGGATC	970	0.0	42.216496	6
ACCCCGG	1925	0.0	42.1948	2