SRR3553068_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553068_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	612824
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT	4040	0.6592431105831364	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1745	0.28474733365533983	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	762	0.12434238867929455	No Hit
CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC	760	0.12401603070375834	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTAATC	25	3.888666E-5	45.000004	8
GGCCGTA	35	1.210683E-7	45.000004	42
GTTAGAT	25	3.888666E-5	45.000004	24
TGACGTC	25	3.888666E-5	45.000004	11
TTATCCG	25	3.888666E-5	45.000004	1
TTATACG	25	3.888666E-5	45.000004	1
TCTACGG	25	3.888666E-5	45.000004	2
CGAATTG	50	2.1827873E-11	45.000004	1
ACTCGAG	25	3.888666E-5	45.000004	18
CGTAACG	35	1.210683E-7	45.000004	1
TATACGG	25	3.888666E-5	45.000004	2
TAATAGG	45	3.8380676E-10	45.0	2
GTCGCCC	20	7.0307066E-4	45.0	44
CTCCGTA	20	7.0307066E-4	45.0	43
ACGTTGA	20	7.0307066E-4	45.0	35
TAGCGAT	20	7.0307066E-4	45.0	45
TAAACCG	20	7.0307066E-4	45.0	1
TACGGTA	20	7.0307066E-4	45.0	4
TGTGACG	20	7.0307066E-4	45.0	13
AACGGAT	20	7.0307066E-4	45.0	33