##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553068_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 612824 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.816794055063117 33.0 31.0 34.0 30.0 34.0 2 32.01491782306176 33.0 31.0 34.0 30.0 34.0 3 32.18086922183204 34.0 31.0 34.0 30.0 34.0 4 35.845794224769264 37.0 35.0 37.0 35.0 37.0 5 35.6171331409997 37.0 35.0 37.0 33.0 37.0 6 34.921261243032255 37.0 35.0 37.0 33.0 37.0 7 35.36440642011409 37.0 35.0 37.0 33.0 37.0 8 35.76683354437816 37.0 35.0 37.0 35.0 37.0 9 37.4393316841377 39.0 37.0 39.0 35.0 39.0 10 37.0332591412869 39.0 37.0 39.0 33.0 39.0 11 37.046897641084556 39.0 37.0 39.0 33.0 39.0 12 36.92419520123233 39.0 37.0 39.0 33.0 39.0 13 36.87690756236701 39.0 37.0 39.0 33.0 39.0 14 38.07282841403078 40.0 37.0 41.0 33.0 41.0 15 38.094330509248984 40.0 37.0 41.0 33.0 41.0 16 38.004794198660626 40.0 37.0 41.0 33.0 41.0 17 38.026511690142684 40.0 37.0 41.0 33.0 41.0 18 37.998657036930666 40.0 37.0 41.0 33.0 41.0 19 38.032730441366525 40.0 37.0 41.0 33.0 41.0 20 37.934162173805205 40.0 37.0 41.0 33.0 41.0 21 37.902791013406784 40.0 37.0 41.0 33.0 41.0 22 37.91264049710847 40.0 37.0 41.0 33.0 41.0 23 37.80456705350965 40.0 37.0 41.0 33.0 41.0 24 37.65915009856011 39.0 36.0 41.0 33.0 41.0 25 37.682966071824865 40.0 36.0 41.0 33.0 41.0 26 37.63856343746328 40.0 36.0 41.0 33.0 41.0 27 37.54976632768952 39.0 36.0 41.0 33.0 41.0 28 37.501620367348536 39.0 36.0 41.0 33.0 41.0 29 37.315790504288344 39.0 36.0 41.0 32.0 41.0 30 37.37323277156247 39.0 36.0 41.0 32.0 41.0 31 37.31687890813676 39.0 36.0 41.0 32.0 41.0 32 37.278670548150856 39.0 36.0 41.0 32.0 41.0 33 37.06252202916335 39.0 36.0 41.0 31.0 41.0 34 37.05961907497095 39.0 35.0 41.0 31.0 41.0 35 37.0370236805347 39.0 35.0 41.0 31.0 41.0 36 36.96338263514484 39.0 35.0 41.0 31.0 41.0 37 36.889723640066315 39.0 35.0 41.0 31.0 41.0 38 36.68730826468937 39.0 35.0 40.0 31.0 41.0 39 36.6958017310027 39.0 35.0 40.0 31.0 41.0 40 36.59367452971816 39.0 35.0 40.0 30.0 41.0 41 36.56664393039437 39.0 35.0 40.0 31.0 41.0 42 36.48452573658995 39.0 35.0 40.0 30.0 41.0 43 36.39239977546571 39.0 35.0 40.0 30.0 41.0 44 36.291217380520344 38.0 35.0 40.0 30.0 41.0 45 36.06713673093743 38.0 35.0 40.0 30.0 41.0 46 35.9289861363132 38.0 35.0 40.0 30.0 41.0 47 35.79450217354412 38.0 35.0 40.0 29.0 41.0 48 35.70175450047648 38.0 34.0 40.0 29.0 41.0 49 35.59347545135308 38.0 34.0 40.0 28.0 41.0 50 35.4992248998081 38.0 34.0 40.0 28.0 41.0 51 34.30606340482749 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 6.0 11 2.0 12 8.0 13 12.0 14 19.0 15 28.0 16 56.0 17 110.0 18 221.0 19 387.0 20 665.0 21 1048.0 22 1495.0 23 2106.0 24 2569.0 25 3156.0 26 3762.0 27 4831.0 28 6033.0 29 7812.0 30 10445.0 31 13534.0 32 18291.0 33 25090.0 34 38301.0 35 48489.0 36 58372.0 37 86266.0 38 129427.0 39 150239.0 40 41.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.849052909154995 30.678955132305525 21.353275981358433 27.11871597718105 2 25.38428651619388 29.48432176285524 19.786594519796875 25.344797201154 3 20.847257940289545 31.311110530919155 20.393293996318683 27.448337532472618 4 20.58421341200736 32.60463036695691 19.15900813284075 27.652148088194977 5 18.419807318251245 32.438024620445674 18.414422411654897 30.727745649648185 6 19.706473636802734 38.46063470099082 19.686076263331724 22.14681539887472 7 84.5624518621986 5.371362740362649 5.261706460582484 4.804478936856259 8 86.31711551766902 4.575701996005378 4.43879482526794 4.668387661057661 9 78.54506350926204 8.632005273944884 7.899005260890565 4.923925955902511 10 34.32029424435074 34.59231361696017 13.296966176259414 17.79042596242967 11 27.54379724031696 30.509248985026694 22.788924715742205 19.158029058914142 12 26.338230878686215 26.484276072738666 27.868523425975482 19.308969622599637 13 25.765146273644635 27.3670743965641 25.52918945733196 21.338589872459305 14 21.70443716303539 28.72668172264794 27.780080414605173 21.7888006997115 15 19.833100531310784 29.911361173844362 27.321057922013498 22.934480372831352 16 21.894214325809696 28.713953761602024 26.538288317689908 22.853543594898373 17 21.856356800647493 27.468898084931396 27.632077072699502 23.042668041721605 18 23.720350377922536 27.623265407360027 25.25749644269807 23.39888777201937 19 22.676168035194443 30.915401485581505 24.72634883751289 21.68208164171116 20 25.271856193621662 28.377805046799732 25.08256856781066 21.267770191767944 21 23.837512891140033 28.56415545083091 25.622038301372008 21.976293356657052 22 23.23978825894547 26.628199939950132 24.783787841207264 25.348223959897133 23 22.00550239546754 29.287854261582446 24.567902040390063 24.13874130255995 24 20.046212289335926 29.530664595381385 26.63994882706944 23.783174288213253 25 22.46550396198582 29.062504079474692 25.006363980522956 23.465627978016528 26 24.51731655418195 28.135157891988566 24.079344151012364 23.268181402817124 27 21.16447789251074 26.832663211623565 26.108148505933187 25.894710389932506 28 21.185201623957287 29.20332754591857 27.630118924846286 21.98135190527786 29 21.056942939571556 28.95284779969453 25.24346304975001 24.746746210983904 30 22.49667114864953 25.81377361199953 26.72724958552537 24.962305653825567 31 22.84685325639988 28.943709776379517 23.566635771444982 24.642801195775622 32 22.325822748456325 26.440707283004585 25.102965941281674 26.130504027257416 33 21.76089709280315 26.47954388209339 25.20397373471013 26.555585290393324 34 18.934637024659608 27.698980457684424 27.48603187864705 25.880350639008913 35 21.92799237627769 25.423449473258223 28.321671475007506 24.326886675456574 36 21.55333342036213 28.095015860997613 26.011057008211168 24.340593710429097 37 21.787658446797124 29.12402255786327 22.533549599885124 26.554769395454485 38 21.300895526284872 28.11410780256648 25.852120674125032 24.732875997023616 39 21.987389527825282 24.381388457371123 24.82703027296581 28.804191741837787 40 23.570062530188114 25.339575473545423 25.188961267835463 25.901400728431 41 21.490509510071405 23.845998198503978 28.350064618879156 26.313427672545465 42 23.64006631594063 25.57716407973578 25.77020482226545 25.012564782058146 43 21.634270198295106 24.59042074070206 27.77518504497213 26.0001240160307 44 22.99485659830555 24.16990848922366 25.489210605328772 27.34602430714202 45 24.040344372935785 23.864111066146236 26.891734005195616 25.203810555722363 46 20.523837186533164 24.91482056838505 28.217726459799223 26.34361578528256 47 21.169046904168244 26.392243123637453 26.431732438677336 26.006977533516963 48 21.926034228424474 25.477135360233934 28.00640967063953 24.59042074070206 49 23.226733939924024 25.03475712439461 26.989315039880946 24.749193895800424 50 21.31052308656319 24.434421628395757 26.36417633774134 27.89087894729971 51 21.16235656566975 23.702074331292508 28.491703980261867 26.64386512277587 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2149.0 1 1745.0 2 1341.0 3 909.5 4 478.0 5 482.5 6 487.0 7 501.5 8 516.0 9 554.0 10 592.0 11 652.5 12 713.0 13 735.5 14 758.0 15 825.0 16 892.0 17 990.5 18 1089.0 19 1218.0 20 1347.0 21 1492.0 22 1637.0 23 2603.5 24 3570.0 25 3598.0 26 4314.0 27 5002.0 28 6090.0 29 7178.0 30 8407.5 31 9637.0 32 11050.5 33 12464.0 34 13694.5 35 14925.0 36 17185.5 37 19446.0 38 21131.5 39 22817.0 40 23608.5 41 24400.0 42 25647.0 43 26894.0 44 30544.5 45 34195.0 46 38490.5 47 42786.0 48 47357.0 49 51928.0 50 58458.0 51 64988.0 52 59893.0 53 54798.0 54 49213.5 55 43629.0 56 38597.0 57 33565.0 58 31410.0 59 29255.0 60 26535.0 61 23815.0 62 21587.5 63 19360.0 64 17304.0 65 15248.0 66 13310.0 67 11372.0 68 9832.0 69 8292.0 70 6789.0 71 5286.0 72 4591.0 73 3896.0 74 3658.5 75 2801.0 76 2181.0 77 1801.5 78 1422.0 79 1008.0 80 594.0 81 560.0 82 526.0 83 369.0 84 212.0 85 129.5 86 47.0 87 30.5 88 14.0 89 13.5 90 13.0 91 12.5 92 12.0 93 8.5 94 5.0 95 5.5 96 6.0 97 3.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 612824.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.231826469558545 #Duplication Level Percentage of deduplicated Percentage of total 1 74.82371790419093 19.62762783869937 2 10.741753067447684 5.6355160488827165 3 3.853365579383969 3.032424516065106 4 1.8877866514959554 1.980803674143636 5 1.0375522585254324 1.3608445399368845 6 0.692544173077762 1.0900019142407864 7 0.4911501824770111 0.9018636450060278 8 0.37313708591162864 0.7830453829592481 9 0.28196359695973827 0.665677813156236 >10 4.073298781889176 26.808654597165983 >50 1.4867398376183638 27.27529597708882 >100 0.25254906332569727 9.35764600236772 >500 0.0031727269262022276 0.5176683458565515 >1k 0.001269090770480891 0.9629297044309164 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGCT 4040 0.6592431105831364 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1745 0.28474733365533983 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 762 0.12434238867929455 No Hit CCTGTCTCTTATACACATCTGACGCTTCACCCGTCGTATGCCGTCTTCTGC 760 0.12401603070375834 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7264728535435949 0.0 2 0.0 0.0 0.0 0.9870696970092555 0.0 3 0.0 0.0 0.0 1.2845449917105074 0.0 4 0.0 0.0 0.0 2.515567275433077 0.0 5 0.0 0.0 0.0 2.7032231113663956 0.0 6 0.0 0.0 0.0 3.7824889364646292 0.0 7 0.0 0.0 0.0 4.553020116705612 0.0 8 0.0 0.0 0.0 5.222869861493675 0.0 9 0.0 0.0 0.0 6.0970196989674035 0.0 10 0.0 0.0 0.0 7.446346748821847 0.0 11 0.0 0.0 0.0 8.743782880566036 0.0 12 0.0 0.0 0.0 9.404657781026852 0.0 13 0.0 0.0 0.0 9.669170920198948 0.0 14 0.0 0.0 0.0 9.973010195423155 0.0 15 0.0 0.0 0.0 10.25743117110296 0.0 16 0.0 0.0 0.0 10.841775126300536 0.0 17 0.0 0.0 0.0 11.544097489654453 0.0 18 0.0 0.0 0.0 12.482539848308813 0.0 19 0.0 0.0 0.0 12.866173648551623 0.0 20 0.0 0.0 0.0 13.327317467984283 0.0 21 0.0 0.0 0.0 13.807716407973578 0.0 22 0.0 0.0 0.0 14.312755375115858 0.0 23 0.0 0.0 0.0 14.82774826051199 0.0 24 0.0 0.0 0.0 15.213666566583553 0.0 25 0.0 0.0 0.0 15.555852903933266 0.0 26 0.0 0.0 0.0 15.87290967716669 0.0 27 0.0 0.0 0.0 16.256869835385036 0.0 28 0.0 0.0 0.0 16.59628212994269 0.0 29 0.0 0.0 0.0 16.98970666945159 0.0 30 0.0 0.0 0.0 17.51693797893033 0.0 31 0.0 0.0 0.0 17.856350273487983 0.0 32 0.0 0.0 0.0 18.20946960301816 0.0 33 0.0 0.0 0.0 18.55181911935564 0.0 34 0.0 0.0 0.0 18.88959962403561 0.0 35 0.0 0.0 0.0 19.282208268605668 0.0 36 0.0 0.0 0.0 19.61852016239573 0.0 37 0.0 0.0 0.0 19.94961032857721 0.0 38 0.0 0.0 0.0 20.303871911021762 0.0 39 0.0 0.0 0.0 20.729442711120974 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTAATC 25 3.888666E-5 45.000004 8 GGCCGTA 35 1.210683E-7 45.000004 42 GTTAGAT 25 3.888666E-5 45.000004 24 TGACGTC 25 3.888666E-5 45.000004 11 TTATCCG 25 3.888666E-5 45.000004 1 TTATACG 25 3.888666E-5 45.000004 1 TCTACGG 25 3.888666E-5 45.000004 2 CGAATTG 50 2.1827873E-11 45.000004 1 ACTCGAG 25 3.888666E-5 45.000004 18 CGTAACG 35 1.210683E-7 45.000004 1 TATACGG 25 3.888666E-5 45.000004 2 TAATAGG 45 3.8380676E-10 45.0 2 GTCGCCC 20 7.0307066E-4 45.0 44 CTCCGTA 20 7.0307066E-4 45.0 43 ACGTTGA 20 7.0307066E-4 45.0 35 TAGCGAT 20 7.0307066E-4 45.0 45 TAAACCG 20 7.0307066E-4 45.0 1 TACGGTA 20 7.0307066E-4 45.0 4 TGTGACG 20 7.0307066E-4 45.0 13 AACGGAT 20 7.0307066E-4 45.0 33 >>END_MODULE