SRR3553065_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553065_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	733043
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT	3125	0.4263051417174708	No Hit
AATCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCT	2478	0.3380429251762857	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCC	2434	0.3320405487809037	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGT	2351	0.3207178842168877	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1508	0.20571780918718277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATTG	20	7.031612E-4	45.000004	1
CGAAACG	40	6.8084773E-9	45.000004	1
TAACGCG	20	7.031612E-4	45.000004	1
CGCGAAA	20	7.031612E-4	45.000004	14
CGACAAT	20	7.031612E-4	45.000004	22
TTATACG	20	7.031612E-4	45.000004	1
GTTCGTC	20	7.031612E-4	45.000004	42
CGGATTA	20	7.031612E-4	45.000004	13
CTACGTG	20	7.031612E-4	45.000004	14
TAATTCG	20	7.031612E-4	45.000004	15
TCTAACG	20	7.031612E-4	45.000004	1
CTTGACG	20	7.031612E-4	45.000004	1
AGTTCGT	20	7.031612E-4	45.000004	29
CGTACCG	20	7.031612E-4	45.000004	1
TCGTACG	20	7.031612E-4	45.000004	1
CGGTATC	20	7.031612E-4	45.000004	37
TATCGCG	20	7.031612E-4	45.000004	1
CCCGCAT	20	7.031612E-4	45.000004	14
GTCGGAC	20	7.031612E-4	45.000004	20
GGTCGAC	25	3.889418E-5	45.0	26