##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553065_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 733043 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.900172295486076 33.0 31.0 34.0 30.0 34.0 2 32.094736597989474 34.0 31.0 34.0 30.0 34.0 3 32.24233094102256 34.0 31.0 34.0 30.0 34.0 4 35.88590983066478 37.0 35.0 37.0 35.0 37.0 5 35.67095109018161 37.0 35.0 37.0 33.0 37.0 6 35.69137690421981 37.0 35.0 37.0 33.0 37.0 7 35.77211023091415 37.0 35.0 37.0 35.0 37.0 8 35.82630214052927 37.0 35.0 37.0 35.0 37.0 9 37.5250619677154 39.0 37.0 39.0 35.0 39.0 10 37.07639524557222 39.0 37.0 39.0 33.0 39.0 11 37.05464345202123 39.0 37.0 39.0 33.0 39.0 12 36.96837702563151 39.0 37.0 39.0 33.0 39.0 13 36.91359988431784 39.0 37.0 39.0 33.0 39.0 14 38.114622198152084 40.0 37.0 41.0 33.0 41.0 15 38.14600371328831 40.0 37.0 41.0 33.0 41.0 16 38.05693526846311 40.0 37.0 41.0 33.0 41.0 17 38.0265741573141 40.0 37.0 41.0 33.0 41.0 18 37.97795081598215 40.0 37.0 41.0 33.0 41.0 19 38.01441661676054 40.0 37.0 41.0 33.0 41.0 20 37.93714556990518 40.0 37.0 41.0 33.0 41.0 21 37.93127142609642 40.0 37.0 41.0 33.0 41.0 22 37.88806659363775 40.0 37.0 41.0 33.0 41.0 23 37.79503794456805 40.0 37.0 41.0 33.0 41.0 24 37.661435959418476 40.0 36.0 41.0 33.0 41.0 25 37.689964981590435 40.0 36.0 41.0 33.0 41.0 26 37.662565497521975 40.0 36.0 41.0 33.0 41.0 27 37.57883916768866 40.0 36.0 41.0 33.0 41.0 28 37.53861096825152 40.0 36.0 41.0 33.0 41.0 29 37.38690226903469 39.0 36.0 41.0 32.0 41.0 30 37.40069954968535 39.0 36.0 41.0 32.0 41.0 31 37.39192925926583 39.0 36.0 41.0 32.0 41.0 32 37.287213710519026 39.0 36.0 41.0 32.0 41.0 33 37.26089738255464 39.0 36.0 41.0 32.0 41.0 34 37.17940011704634 39.0 35.0 41.0 32.0 41.0 35 37.109760273271824 39.0 35.0 41.0 31.0 41.0 36 37.07896671818706 39.0 35.0 41.0 31.0 41.0 37 36.99027205771012 39.0 35.0 41.0 31.0 41.0 38 36.96215638100357 39.0 35.0 41.0 31.0 41.0 39 36.914973610006506 39.0 35.0 41.0 31.0 41.0 40 36.77220299491299 39.0 35.0 41.0 31.0 41.0 41 36.72443772057028 39.0 35.0 40.0 31.0 41.0 42 36.65539675025885 39.0 35.0 40.0 31.0 41.0 43 36.587842732281736 39.0 35.0 40.0 31.0 41.0 44 36.52558581147354 39.0 35.0 40.0 31.0 41.0 45 36.36966180701541 38.0 35.0 40.0 30.0 41.0 46 36.23883046424289 38.0 35.0 40.0 30.0 41.0 47 36.13819653144495 38.0 35.0 40.0 30.0 41.0 48 36.05840721485643 38.0 35.0 40.0 30.0 41.0 49 35.9048445998393 38.0 35.0 40.0 29.0 41.0 50 35.85136069780354 38.0 35.0 40.0 29.0 41.0 51 34.56341033199962 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 3.0 9 1.0 10 4.0 11 2.0 12 2.0 13 7.0 14 13.0 15 28.0 16 44.0 17 123.0 18 213.0 19 438.0 20 717.0 21 1140.0 22 1568.0 23 2200.0 24 2817.0 25 3516.0 26 4350.0 27 5415.0 28 6993.0 29 9117.0 30 12012.0 31 15825.0 32 20889.0 33 28707.0 34 46052.0 35 56285.0 36 64968.0 37 95046.0 38 154506.0 39 199991.0 40 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.19343612857636 32.8269965063441 19.164632906937246 26.814934458142293 2 23.830116377893248 31.28875113738212 19.704846782521628 25.17628570220301 3 21.618513511485684 30.313364973132543 21.082119329971093 26.98600218541068 4 21.707457816253616 30.604480228308574 19.212924753391 28.475137202046813 5 18.760973094347808 33.83062112318104 18.015996333093693 29.39240944937746 6 20.478471249299155 36.227479151973355 20.1292420772042 23.164807521523294 7 85.03771265805689 5.473621602006976 5.34579826831441 4.142867471621719 8 86.63748238507154 4.041372743481624 4.0221378554873315 5.2990070159595 9 79.54553825628238 7.944417994578763 7.537074905564885 4.9729688435739785 10 36.039632054326965 34.67982096548224 13.15761831161337 16.122928668577423 11 27.45214127957023 28.24786540489439 25.344215823628353 18.95577749190702 12 28.723690151873765 22.288051314861473 29.516685924290936 19.471572608973826 13 25.997656344852892 25.230443507406797 27.074946490178615 21.6969536575617 14 21.138459817500475 27.724567317333364 28.13231965928329 23.004653205882875 15 20.462510384793255 29.357350114522614 28.45535664347112 21.724782857213015 16 23.15266635108718 26.611672166571402 28.684265452367736 21.551396029973684 17 21.97388147762137 26.9629476033466 27.714472411577496 23.348698507454543 18 23.321278560739277 26.739904753200015 25.905847269532618 24.03296941652809 19 23.57310553405462 29.752824868391077 26.39203975755856 20.282029839995744 20 25.48595375714658 28.09794241265519 25.30479112412232 21.111312706075903 21 25.151048437813333 27.209863541429357 26.30800648802321 21.331081532734096 22 22.954860765330274 26.767597535205983 26.047312367760146 24.230229331703597 23 24.05711533975497 27.5948341366059 24.708509596299262 23.63954092733987 24 22.531283976519795 27.563867331111545 25.68948888400817 24.215359808360493 25 23.100691228208987 27.067989190265784 24.753254583973927 25.0780649975513 26 24.11563850960994 27.345326263261498 24.727608066648205 23.811427160480353 27 21.621105446747325 26.53214067933259 27.064715166777393 24.782038707142693 28 21.727784045410704 27.81569430442689 26.443605627500705 24.0129160226617 29 23.207642662163067 28.590000859431164 25.394826770053054 22.807529708352718 30 23.72575687920081 26.546464532094298 25.487181515954727 24.240597072750166 31 23.91264905332975 26.51986309125113 23.886456865422627 25.681030989996493 32 24.01973690492918 28.120314906492528 24.790633018799717 23.06931516977858 33 23.067541740389036 26.568973443576983 26.199690877615637 24.163793938418348 34 21.31921319758868 27.157615583260466 26.34552134049435 25.177649878656506 35 22.030631218086796 28.00204080797443 26.173635107353867 23.793692866584905 36 21.458768448781314 29.36553517324359 26.146351578283948 23.029344799691152 37 21.74961086866664 31.095310916276397 24.114956421383194 23.04012179367377 38 22.6138166519563 28.607053065099862 25.17505794339486 23.604072339548978 39 22.4971795651824 25.835455764532227 26.880687763200793 24.78667690708458 40 22.602357569746932 27.126785195411458 26.434738480552983 23.83611875428863 41 20.524307578136618 25.816902964764687 28.71550509315279 24.94328436394591 42 22.158727387070062 27.833837851258387 25.01572213362654 24.99171262804501 43 21.25987152186161 26.29068144706381 26.888327151340373 25.561119879734207 44 22.757873685445464 25.697810360374497 24.963747010748346 26.580568943431693 45 23.0294812173365 25.966825957003888 26.5957113020655 24.407981523594113 46 20.184081970634736 26.274311329621863 29.07114589457917 24.470460805164226 47 22.02039989468558 26.226565153749508 27.326227792912555 24.42680715865236 48 21.950554060266587 25.20370564891828 28.461495437511854 24.384244853303287 49 21.727101957183958 26.338427622936173 27.216820841342187 24.717649578537685 50 21.07707187709316 24.281795201645743 26.86813733982863 27.77299558143247 51 20.975986401889113 24.03365150475484 29.407551808011263 25.582810285344788 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1857.0 1 1474.0 2 1091.0 3 764.5 4 438.0 5 423.5 6 409.0 7 416.0 8 423.0 9 526.0 10 629.0 11 679.0 12 729.0 13 718.5 14 708.0 15 734.0 16 760.0 17 827.5 18 895.0 19 1143.0 20 1391.0 21 1513.0 22 1635.0 23 2337.5 24 3040.0 25 3623.0 26 5441.0 27 6676.0 28 7999.5 29 9323.0 30 11024.0 31 12725.0 32 14641.5 33 16558.0 34 19234.0 35 21910.0 36 22285.0 37 22660.0 38 25291.0 39 27922.0 40 30304.5 41 32687.0 42 38135.0 43 43583.0 44 48065.0 45 52547.0 46 58311.0 47 64075.0 48 61878.5 49 59682.0 50 56297.5 51 52913.0 52 50180.5 53 47448.0 54 45212.0 55 42976.0 56 40349.5 57 37723.0 58 35865.0 59 34007.0 60 34038.5 61 34070.0 62 31252.5 63 28435.0 64 24185.5 65 19936.0 66 17454.0 67 14972.0 68 12824.0 69 10676.0 70 9007.0 71 7338.0 72 6314.0 73 5290.0 74 4369.0 75 2990.5 76 2533.0 77 1856.5 78 1180.0 79 987.0 80 794.0 81 585.0 82 376.0 83 252.5 84 129.0 85 129.0 86 129.0 87 104.0 88 79.0 89 50.0 90 21.0 91 15.0 92 9.0 93 5.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 733043.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.23343951177353 #Duplication Level Percentage of deduplicated Percentage of total 1 75.78195280203151 18.364573693121073 2 9.893348220525437 4.794997113420309 3 3.4706648036016965 2.5231843675116923 4 1.6017223230117315 1.552609641174487 5 0.953778734130217 1.155666963058027 6 0.6112885039179615 0.8888173790363074 7 0.47661112858929056 0.8084948868714682 8 0.3502830684176267 0.6790850840397589 9 0.3180176698319806 0.6935995768993621 >10 4.486974650908413 27.572115287979965 >50 1.791632511648136 30.1754491793209 >100 0.25578545829481136 8.440489016321592 >500 0.005104366130051667 0.7159269733280006 >1k 0.002835758961139815 1.6349908379170466 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCTGCT 3125 0.4263051417174708 No Hit AATCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGTCTTCT 2478 0.3380429251762857 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCC 2434 0.3320405487809037 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCTACATCATCGTATGCCGT 2351 0.3207178842168877 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1508 0.20571780918718277 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.0925293604877205E-4 0.0 0.0 0.48960292915968096 0.0 2 4.0925293604877205E-4 0.0 0.0 0.7101902616899691 0.0 3 4.0925293604877205E-4 0.0 0.0 1.0313173988429056 0.0 4 4.0925293604877205E-4 0.0 0.0 2.3924926641411215 0.0 5 4.0925293604877205E-4 0.0 0.0 2.5695627678048902 0.0 6 4.0925293604877205E-4 0.0 0.0 3.4785135387692128 0.0 7 4.0925293604877205E-4 0.0 0.0 4.144231648075215 0.0 8 4.0925293604877205E-4 0.0 0.0 4.66261870040366 0.0 9 4.0925293604877205E-4 0.0 0.0 5.663105711397558 0.0 10 4.0925293604877205E-4 0.0 0.0 6.826748226229566 0.0 11 4.0925293604877205E-4 0.0 0.0 8.081654145800451 0.0 12 4.0925293604877205E-4 0.0 0.0 8.600859704000992 0.0 13 4.0925293604877205E-4 0.0 0.0 8.82826791879876 0.0 14 4.0925293604877205E-4 0.0 0.0 9.110652444672413 0.0 15 4.0925293604877205E-4 0.0 0.0 9.318007265603791 0.0 16 4.0925293604877205E-4 0.0 0.0 9.730943478077002 0.0 17 4.0925293604877205E-4 0.0 0.0 10.25792484206247 0.0 18 4.0925293604877205E-4 0.0 0.0 10.985849397647886 0.0 19 4.0925293604877205E-4 0.0 0.0 11.30165624663219 0.0 20 4.0925293604877205E-4 0.0 0.0 11.684171324192441 0.0 21 4.0925293604877205E-4 0.0 0.0 12.05809209009567 0.0 22 4.0925293604877205E-4 0.0 0.0 12.453021173382735 0.0 23 4.0925293604877205E-4 0.0 0.0 12.837309680332531 0.0 24 4.0925293604877205E-4 0.0 0.0 13.140429688299323 0.0 25 5.456705813983627E-4 0.0 0.0 13.420767949492731 0.0 26 5.456705813983627E-4 0.0 0.0 13.658816740627767 0.0 27 5.456705813983627E-4 0.0 0.0 13.955661536908476 0.0 28 5.456705813983627E-4 0.0 0.0 14.229178915834405 0.0 29 5.456705813983627E-4 0.0 0.0 14.524795953306969 0.0 30 5.456705813983627E-4 0.0 0.0 14.915496089588196 0.0 31 5.456705813983627E-4 0.0 0.0 15.2142507329038 0.0 32 5.456705813983627E-4 0.0 0.0 15.503456141044932 0.0 33 5.456705813983627E-4 0.0 0.0 15.812714943052454 0.0 34 5.456705813983627E-4 0.0 0.0 16.085823069042334 0.0 35 5.456705813983627E-4 0.0 0.0 16.373255047793922 0.0 36 6.820882267479534E-4 0.0 0.0 16.66382463238855 0.0 37 6.820882267479534E-4 0.0 0.0 16.94020678186682 0.0 38 6.820882267479534E-4 0.0 0.0 17.25342169558948 0.0 39 6.820882267479534E-4 0.0 0.0 17.578777779748254 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGATTG 20 7.031612E-4 45.000004 1 CGAAACG 40 6.8084773E-9 45.000004 1 TAACGCG 20 7.031612E-4 45.000004 1 CGCGAAA 20 7.031612E-4 45.000004 14 CGACAAT 20 7.031612E-4 45.000004 22 TTATACG 20 7.031612E-4 45.000004 1 GTTCGTC 20 7.031612E-4 45.000004 42 CGGATTA 20 7.031612E-4 45.000004 13 CTACGTG 20 7.031612E-4 45.000004 14 TAATTCG 20 7.031612E-4 45.000004 15 TCTAACG 20 7.031612E-4 45.000004 1 CTTGACG 20 7.031612E-4 45.000004 1 AGTTCGT 20 7.031612E-4 45.000004 29 CGTACCG 20 7.031612E-4 45.000004 1 TCGTACG 20 7.031612E-4 45.000004 1 CGGTATC 20 7.031612E-4 45.000004 37 TATCGCG 20 7.031612E-4 45.000004 1 CCCGCAT 20 7.031612E-4 45.000004 14 GTCGGAC 20 7.031612E-4 45.000004 20 GGTCGAC 25 3.889418E-5 45.0 26 >>END_MODULE