SRR3553063_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553063_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	524426
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	4156	0.7924854984306652	Illumina Single End Adapter 1 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCC	3667	0.6992406936345643	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGT	3318	0.6326917429723163	No Hit
AATCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT	3225	0.6149580684405427	No Hit
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCGGATACGTTC	1397	0.26638648732137615	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1364	0.2600938931326822	No Hit
AGCCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCGGATACGT	976	0.18610824024743242	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	799	0.15235705323534682	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTT	735	0.14015323420272832	No Hit
AAACTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT	724	0.138055702806497	No Hit
AACTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTG	703	0.13405132468641906	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCT	696	0.1327165319797264	No Hit
AGCCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT	664	0.12661462246341715	No Hit
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	614	0.11708038884418392	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGATACGTTCGTAT	572	0.10907163260402804	No Hit
AGCCCAGGGAATGATCTGTCTCTTATACACATCTGACGCGGATACGTTCGT	557	0.10621136251825805	No Hit
AGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCCT	554	0.10563930850110406	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	552	0.10525793915633475	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAACGG	30	2.163235E-6	45.000004	2
CACTCCG	30	2.163235E-6	45.000004	1
CGTAGCG	30	2.163235E-6	45.000004	1
AGCCGAT	20	7.029775E-4	45.0	43
CTATCGC	25	3.887894E-5	45.0	42
CGTGATT	25	3.887894E-5	45.0	35
GTCTCGA	20	7.029775E-4	45.0	43
CCTACCG	70	0.0	45.0	1
TTCGTGC	20	7.029775E-4	45.0	31
ATATGCG	25	3.887894E-5	45.0	1
TCGATTG	20	7.029775E-4	45.0	1
CCGTCGG	20	7.029775E-4	45.0	45
CGTTAAA	20	7.029775E-4	45.0	31
AGACGAC	20	7.029775E-4	45.0	25
TCGGAAA	20	7.029775E-4	45.0	21
CCATCGA	55	1.8189894E-12	45.0	30
CGGGCTA	25	3.887894E-5	45.0	6
TCGCTAG	20	7.029775E-4	45.0	10
GATATGT	20	7.029775E-4	45.0	40
TTGCGTA	20	7.029775E-4	45.0	32