SRR3553062_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553062_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	499575
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCT	4345	0.8697392783866286	TruSeq Adapter, Index 14 (95% over 22bp)
AATGATACCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGT	2409	0.48220987839663715	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCC	2391	0.4786068157934244	No Hit
AATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCT	2325	0.46539558624831107	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2068	0.41395185908021814	No Hit
AAACTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCT	1131	0.22639243356853325	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTT	804	0.1609367962768353	No Hit
CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC	706	0.14132012210378822	TruSeq Adapter, Index 15 (95% over 21bp)
AATGACTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTT	636	0.12730821198018313	No Hit
AACTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG	548	0.10969323925336537	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGG	65	0.0	45.000004	2
ATACGAC	30	2.1630276E-6	45.000004	1
TGCACGA	30	2.1630276E-6	45.000004	26
CGAAGTA	30	2.1630276E-6	45.000004	30
AGCGTGA	25	3.8876286E-5	45.0	13
CAGAACA	40	6.8012014E-9	45.0	38
CGGAACG	20	7.029454E-4	45.0	1
TCGCACA	25	3.8876286E-5	45.0	19
AGATCGT	20	7.029454E-4	45.0	19
CGAACAG	25	3.8876286E-5	45.0	1
GATCGTC	20	7.029454E-4	45.0	20
CGTATAC	20	7.029454E-4	45.0	42
CAACGTG	25	3.8876286E-5	45.0	1
CGACGGT	25	3.8876286E-5	45.0	28
TTAGCGT	20	7.029454E-4	45.0	39
CTATACG	55	1.8189894E-12	45.0	1
CGTTGAT	40	6.8012014E-9	45.0	25
CGGCACG	20	7.029454E-4	45.0	1
CCTACGC	20	7.029454E-4	45.0	37
CGATTAG	20	7.029454E-4	45.0	1