SRR3553059_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553059_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	539988
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	2390	0.44260242820210816	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1077	0.19944887664170313	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1074	0.19889330874019426	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCC	989	0.18315221819744143	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGT	902	0.16704074905368266	No Hit
AATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	902	0.16704074905368266	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAA	20	7.0299587E-4	45.000004	33
TGATATC	20	7.0299587E-4	45.000004	29
CAACGTA	20	7.0299587E-4	45.000004	38
ATAATCG	20	7.0299587E-4	45.000004	1
GATCCGA	20	7.0299587E-4	45.000004	28
ATATGCG	20	7.0299587E-4	45.000004	1
TAACGCG	20	7.0299587E-4	45.000004	1
GTTAACG	20	7.0299587E-4	45.000004	1
CTTGCGA	20	7.0299587E-4	45.000004	41
TACGAAC	20	7.0299587E-4	45.000004	9
ACAGCGT	20	7.0299587E-4	45.000004	14
TTAACGG	65	0.0	45.000004	2
TTCGGTC	20	7.0299587E-4	45.000004	44
AGCCTTA	20	7.0299587E-4	45.000004	13
CCGAAAT	20	7.0299587E-4	45.000004	22
ATACGTT	20	7.0299587E-4	45.000004	19
CACGTCC	20	7.0299587E-4	45.000004	40
GTACGTA	20	7.0299587E-4	45.000004	42
CCGTCAG	45	3.8380676E-10	45.0	30
TATTACG	35	1.2103192E-7	45.0	1