SRR3553056_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553056_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	746583
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGCT	5422	0.726242092305879	TruSeq Adapter, Index 16 (96% over 25bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1541	0.20640705721935806	No Hit
AAACTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCT	1146	0.1534993430067387	TruSeq Adapter, Index 16 (100% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC	930	0.12456752966515444	TruSeq Adapter, Index 16 (100% over 23bp)
AATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCT	922	0.12349598102287355	TruSeq Adapter, Index 16 (95% over 22bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	796	0.1066190899069494	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGT	752	0.10072557237440447	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGCGTA	30	2.1644755E-6	45.000004	39
GTATACG	30	2.1644755E-6	45.000004	1
ACGTAAG	60	0.0	45.000004	1
TCATACG	45	3.8380676E-10	45.000004	1
TAAGACG	60	0.0	45.000004	1
AAATGCG	30	2.1644755E-6	45.000004	37
AACGTAG	25	3.8894876E-5	45.0	1
GATCGAC	20	7.0316973E-4	45.0	9
TACCACG	35	1.2111559E-7	45.0	1
ACGTTTA	25	3.8894876E-5	45.0	21
CGAAACG	20	7.0316973E-4	45.0	1
TTGTCGC	20	7.0316973E-4	45.0	31
ACCGACG	20	7.0316973E-4	45.0	1
TATATCG	20	7.0316973E-4	45.0	1
CGACACG	35	1.2111559E-7	45.0	1
TACGCCA	25	3.8894876E-5	45.0	14
GTTCGGG	35	1.2111559E-7	45.0	3
CGTAGCG	70	0.0	45.0	1
CGTAACT	35	1.2111559E-7	45.0	27
CGTAACG	35	1.2111559E-7	45.0	1