SRR3553055_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553055_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	759764
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGCT	5691	0.7490483887101784	TruSeq Adapter, Index 16 (96% over 25bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1505	0.1980878272726794	No Hit
AAACTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCT	1199	0.15781216272421436	TruSeq Adapter, Index 16 (100% over 21bp)
CCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCTGC	1054	0.1387272890002685	TruSeq Adapter, Index 16 (100% over 23bp)
AATCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTTCT	985	0.129645521504046	TruSeq Adapter, Index 16 (95% over 22bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	831	0.10937606941102762	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCCGTCTT	812	0.10687529285409679	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTACCCTCTCGTATGCC	789	0.10384803702202262	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCATACG	55	1.8189894E-12	45.000004	1
TAATACG	25	3.889553E-5	45.0	1
CGTATAG	35	1.2111923E-7	45.0	1
AGATACG	25	3.889553E-5	45.0	1
CTATCGC	20	7.031776E-4	45.0	38
ATGGACG	25	3.889553E-5	45.0	11
GACGTAT	25	3.889553E-5	45.0	42
TAGCGAT	35	1.2111923E-7	45.0	45
CAACCCG	20	7.031776E-4	45.0	1
CACGCAA	20	7.031776E-4	45.0	28
CGATTAC	35	1.2111923E-7	45.0	38
CACGACC	100	0.0	45.0	27
TAACGGC	20	7.031776E-4	45.0	3
CGACAAT	20	7.031776E-4	45.0	32
TAGCCCG	20	7.031776E-4	45.0	1
CGTTAGA	35	1.2111923E-7	45.0	42
CCATCGC	20	7.031776E-4	45.0	30
CGTAGCG	40	6.8102963E-9	45.0	1
ACGGATT	20	7.031776E-4	45.0	19
TATTCGA	25	3.889553E-5	45.0	14