SRR3553053_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553053_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379316
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT	3688	0.9722764133334739	TruSeq Adapter, Index 13 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1794	0.47295658501091437	No Hit
AAACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT	1062	0.27997764396967173	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT	743	0.19587889780552362	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	706	0.18612449778021492	TruSeq Adapter, Index 19 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	513	0.13524343818873974	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	458	0.12074365436733489	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT	429	0.11309831380695778	No Hit
TGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	418	0.11019835704267683	No Hit
ACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG	382	0.10070758945048455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCAG	35	1.2090459E-7	45.000004	1
TGAACGG	30	2.1616415E-6	45.000004	2
TCGATCA	35	1.2090459E-7	45.000004	17
CCTCGAT	35	1.2090459E-7	45.000004	15
ATTCCCG	30	2.1616415E-6	45.000004	1
GTTCGGG	70	0.0	45.000004	3
TTAAGTG	30	2.1616415E-6	45.000004	23
AGGTTCG	30	2.1616415E-6	45.000004	1
CGTAGCG	30	2.1616415E-6	45.000004	1
CGCTAGG	35	1.2090459E-7	45.000004	2
ACGGATG	35	1.2090459E-7	45.000004	37
ACGCTAG	35	1.2090459E-7	45.000004	1
CGTACAG	30	2.1616415E-6	45.000004	1
ATATTGG	35	1.2090459E-7	45.000004	2
TATCAGT	20	7.027304E-4	45.0	10
AGCGTAA	20	7.027304E-4	45.0	41
TTGGCGA	20	7.027304E-4	45.0	25
AATCCAT	20	7.027304E-4	45.0	36
TCGTTAA	20	7.027304E-4	45.0	35
TCGCAAT	25	3.8858467E-5	45.0	29