SRR3553046_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553046_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474984
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	2575	0.5421235241608138	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT	2438	0.5132804473413841	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	2323	0.48906910548565846	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1997	0.42043521465986217	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1365	0.2873781011570916	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	637	0.13410978053997608	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	578	0.12168830950095161	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	552	0.11621444090748319	No Hit
AAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	525	0.11053003890657369	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT	487	0.10252976942381217	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTCA	35	1.209919E-7	45.000004	12
CCGTACT	35	1.209919E-7	45.000004	44
TTAACGG	35	1.209919E-7	45.000004	2
GGTACGA	25	3.8873375E-5	45.0	9
TACCCGT	20	7.029101E-4	45.0	34
CTCGTTT	20	7.029101E-4	45.0	28
CTCGTAC	20	7.029101E-4	45.0	26
CGAAACG	20	7.029101E-4	45.0	1
CCGATAC	20	7.029101E-4	45.0	31
TAGGTAT	20	7.029101E-4	45.0	18
AAGACCG	25	3.8873375E-5	45.0	32
ATTCGCG	20	7.029101E-4	45.0	1
ATATGCG	20	7.029101E-4	45.0	1
AAACGCG	20	7.029101E-4	45.0	1
CCGTAGT	20	7.029101E-4	45.0	27
CCGTAGG	55	1.8189894E-12	45.0	2
TCGGACA	25	3.8873375E-5	45.0	21
TCGCTCG	25	3.8873375E-5	45.0	21
ACGTGTT	20	7.029101E-4	45.0	24
ACGTGTA	20	7.029101E-4	45.0	31