SRR3553045_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553045_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	486255
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC	2890	0.5943383615592642	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	2825	0.5809708897594883	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT	2633	0.5414854345970735	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	2326	0.4783498370196707	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1390	0.2858582431028987	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT	645	0.13264645093623717	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	635	0.13058991681319473	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT	560	0.11516591089037645	No Hit
AAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	559	0.11496025747807222	No Hit
CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	548	0.11269806994272553	No Hit
AACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	509	0.10467758686286002	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGA	20	7.029266E-4	45.000004	18
CTTCGAT	20	7.029266E-4	45.000004	19
GATACGA	20	7.029266E-4	45.000004	40
AGTCCGT	20	7.029266E-4	45.000004	33
GGTCGCT	20	7.029266E-4	45.000004	8
CGAAAAC	20	7.029266E-4	45.000004	26
CTATACG	20	7.029266E-4	45.000004	1
GACCGTC	20	7.029266E-4	45.000004	16
CGCGACT	20	7.029266E-4	45.000004	28
CGTTATG	20	7.029266E-4	45.000004	21
ATGTACC	20	7.029266E-4	45.000004	43
TAGCACG	40	6.8012014E-9	45.000004	1
TGCGACG	20	7.029266E-4	45.000004	1
CGCTAAG	20	7.029266E-4	45.000004	1
CGAATCC	20	7.029266E-4	45.000004	30
CATACGT	20	7.029266E-4	45.000004	22
CATACGA	20	7.029266E-4	45.000004	18
AATTCCG	20	7.029266E-4	45.000004	1
CTCGACG	20	7.029266E-4	45.000004	21
CGTCGAC	20	7.029266E-4	45.000004	37