##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553045_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 486255 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.80491511655407 31.0 31.0 34.0 30.0 34.0 2 32.009207103268864 33.0 31.0 34.0 30.0 34.0 3 32.143284901954736 34.0 31.0 34.0 30.0 34.0 4 35.78407625628528 37.0 35.0 37.0 35.0 37.0 5 35.56931651088421 37.0 35.0 37.0 33.0 37.0 6 35.58931836176492 37.0 35.0 37.0 33.0 37.0 7 35.61745997470463 37.0 35.0 37.0 35.0 37.0 8 35.673202332109696 37.0 35.0 37.0 35.0 37.0 9 37.375346268932965 39.0 37.0 39.0 35.0 39.0 10 36.956950571202356 39.0 37.0 39.0 33.0 39.0 11 36.95090847394886 39.0 37.0 39.0 33.0 39.0 12 36.850226732887066 39.0 37.0 39.0 33.0 39.0 13 36.82591027341621 39.0 37.0 39.0 33.0 39.0 14 37.98626235205808 40.0 37.0 41.0 33.0 41.0 15 38.01118137602698 40.0 37.0 41.0 33.0 41.0 16 37.90385497321364 40.0 37.0 41.0 33.0 41.0 17 37.882166764352036 40.0 37.0 41.0 33.0 41.0 18 37.799773781246465 40.0 37.0 41.0 33.0 41.0 19 37.83150815929913 40.0 36.0 41.0 33.0 41.0 20 37.77786346669957 40.0 36.0 41.0 33.0 41.0 21 37.75030796598492 40.0 36.0 41.0 33.0 41.0 22 37.73787621721113 40.0 36.0 41.0 33.0 41.0 23 37.591588775436755 39.0 36.0 41.0 33.0 41.0 24 37.45753154209211 39.0 36.0 41.0 32.0 41.0 25 37.471978694306486 39.0 36.0 41.0 32.0 41.0 26 37.41219936041789 39.0 36.0 41.0 32.0 41.0 27 37.328276315924775 39.0 36.0 41.0 32.0 41.0 28 37.18991886972885 39.0 36.0 41.0 31.0 41.0 29 37.07832721514432 39.0 35.0 41.0 31.0 41.0 30 37.10310845132698 39.0 35.0 41.0 31.0 41.0 31 36.993273076883526 39.0 35.0 41.0 31.0 41.0 32 36.927819765349454 39.0 35.0 41.0 31.0 41.0 33 36.829439285971354 39.0 35.0 41.0 31.0 41.0 34 36.76808670347863 39.0 35.0 41.0 31.0 41.0 35 36.689039701391245 39.0 35.0 41.0 31.0 41.0 36 36.56905944411883 39.0 35.0 40.0 30.0 41.0 37 36.484387821204926 39.0 35.0 40.0 30.0 41.0 38 36.35342155864721 39.0 35.0 40.0 30.0 41.0 39 36.26745431923579 39.0 35.0 40.0 30.0 41.0 40 36.16429445455574 38.0 35.0 40.0 30.0 41.0 41 36.068519603911525 38.0 35.0 40.0 30.0 41.0 42 35.97852772722131 38.0 35.0 40.0 30.0 41.0 43 35.87943980010488 38.0 35.0 40.0 29.0 41.0 44 35.77959918149942 38.0 35.0 40.0 29.0 41.0 45 35.59577382237715 38.0 34.0 40.0 28.0 41.0 46 35.413093952761415 38.0 34.0 40.0 28.0 41.0 47 35.29992699303863 37.0 34.0 40.0 27.0 41.0 48 35.232413034313275 37.0 34.0 40.0 27.0 41.0 49 35.0722563264131 37.0 34.0 40.0 27.0 41.0 50 34.977884032040805 37.0 34.0 40.0 27.0 41.0 51 33.65372489743036 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 3.0 11 1.0 12 5.0 13 9.0 14 24.0 15 29.0 16 60.0 17 113.0 18 231.0 19 465.0 20 755.0 21 1107.0 22 1628.0 23 2146.0 24 2545.0 25 3096.0 26 3595.0 27 4391.0 28 5413.0 29 6966.0 30 9076.0 31 11756.0 32 15561.0 33 20867.0 34 32065.0 35 39586.0 36 47382.0 37 67865.0 38 99556.0 39 109935.0 40 22.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.629505095063287 32.148564025048586 20.026734943599553 27.195195936288574 2 23.73055289919898 31.389497280233623 19.25080461897564 25.629145201591758 3 21.046981522040905 29.833523562739718 22.19822932412006 26.92126559109932 4 22.18794665350485 30.986005285292695 18.767519100060667 28.05852896114179 5 18.998467882078334 34.857019465095476 16.828001768619348 29.31651088420685 6 20.061284716866666 37.022755550071466 20.355780403286342 22.56017932977553 7 82.29180162671848 7.23961707334629 5.813205005604055 4.655376294331163 8 83.60366474380726 5.027814624014149 4.765812176738542 6.602708455440047 9 77.88917337610924 7.999300778398166 8.555181951856536 5.556343893636055 10 36.655869862520696 31.551552169129366 13.107114579798665 18.685463388551273 11 26.905841585176503 30.044729617176174 22.666296490524516 20.383132307122807 12 26.876844454041603 24.52581464457949 28.819857893492095 19.777483007886808 13 25.395111618389528 25.608168553536725 26.267699046796434 22.729020781277313 14 21.967074888690092 26.92558431275771 28.997748095135268 22.10959270341693 15 20.49048338834562 28.308192203679138 27.502442134271117 23.69888227370413 16 22.33293230917934 26.94224223915435 26.675304109983443 24.049521341682862 17 21.636384201704868 26.655150075577627 26.822346299780982 24.886119422936524 18 23.755025655263186 25.853307421003386 25.794284891672064 24.597382032061365 19 22.986704506894533 28.7423265570534 25.91623736516848 22.35473157088359 20 24.72056842603161 28.50459121242969 24.70699530081953 22.067845060719172 21 24.552549588179044 27.09771621885636 25.495470483594 22.8542637093706 22 23.787518894407256 25.68014724784321 24.208697082806346 26.32363677494319 23 23.190507038488036 27.271287698841146 23.227935959527407 26.310269303143414 24 22.324089212450257 29.13553588137911 24.471933450555778 24.068441455614852 25 22.9124636250527 27.981820238352306 23.76284048493075 25.342875651664247 26 25.323955537732264 27.285066477465524 22.96860700661176 24.422370978190454 27 21.93170250177376 26.367646605176297 25.201180450586623 26.49947044246332 28 22.842952771693863 28.91281323585362 25.430278351893556 22.813955640558966 29 24.389672085634082 29.06581937460797 23.014467717555604 23.53004082220234 30 24.200059639489567 27.612466709853884 23.29621289241242 24.891260758244133 31 26.05567037871076 29.741390834027413 20.51475049099752 23.688188296264308 32 25.27110261077007 27.036842808814303 22.430206373199248 25.26184820721638 33 24.69506740290588 27.852875548837545 23.088297292572825 24.363759755683745 34 22.440283390402154 28.75240357425631 23.301765534544632 25.505547500796904 35 25.429867045068942 27.459871877924137 23.40438658728445 23.70587448972247 36 25.719427049593317 28.70469198260172 22.61262094991311 22.963260017891844 37 24.0805750069408 29.677843929625404 20.851199473527267 25.39038158990653 38 25.87469537588302 28.33883456211247 23.646646306978848 22.139823755025656 39 25.468324233169838 24.890026837770304 23.248912607582444 26.392736321477418 40 26.31499933162641 25.243339400108994 23.760989604220008 24.680671664044585 41 24.44190805235936 23.46875610533568 25.621330371924195 26.468005470380767 42 26.087546657617917 24.934242321415717 23.535182157509947 25.44302886345642 43 24.65311410679582 24.045613926849082 25.13064133016627 26.17063063618883 44 23.84016616795714 23.236984709668796 24.64385970324213 28.27898941913194 45 26.141222198229325 24.367050210280613 25.810325857831796 23.681401733658266 46 22.67596220090282 25.116245591304974 27.952000493568192 24.255791714224017 47 24.131988360016862 25.760969038878777 24.414144841698285 25.692897759406076 48 23.123258372664548 25.017531953398937 27.600950118764843 24.25825955517167 49 24.448900268377702 23.8720424468643 26.194075125191514 25.48498215956648 50 22.751025696393867 23.59811210167505 26.167751488416574 27.483110713514513 51 23.374566842500336 23.463820423440378 27.47982025891765 25.681792475141645 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1706.0 1 1359.0 2 1012.0 3 729.0 4 446.0 5 442.5 6 439.0 7 453.0 8 467.0 9 540.0 10 613.0 11 651.0 12 689.0 13 748.0 14 807.0 15 806.5 16 806.0 17 796.5 18 787.0 19 933.5 20 1080.0 21 1151.5 22 1223.0 23 1457.5 24 1692.0 25 1937.5 26 2605.5 27 3028.0 28 3475.5 29 3923.0 30 5120.0 31 6317.0 32 8122.5 33 9928.0 34 9867.5 35 9807.0 36 11074.5 37 12342.0 38 12687.5 39 13033.0 40 13773.0 41 14513.0 42 16780.0 43 19047.0 44 21743.5 45 24440.0 46 29905.5 47 35371.0 48 39431.0 49 43491.0 50 45717.0 51 47943.0 52 44872.5 53 41802.0 54 38531.0 55 35260.0 56 32033.5 57 28807.0 58 28219.5 59 27632.0 60 25168.5 61 22705.0 62 20642.0 63 18579.0 64 16460.5 65 14342.0 66 13207.5 67 12073.0 68 10424.0 69 8775.0 70 7352.5 71 5930.0 72 5468.0 73 5006.0 74 4200.5 75 2852.0 76 2309.0 77 1690.5 78 1072.0 79 899.0 80 726.0 81 537.5 82 349.0 83 247.0 84 145.0 85 144.5 86 144.0 87 93.0 88 42.0 89 30.0 90 18.0 91 12.5 92 7.0 93 3.5 94 0.0 95 0.5 96 1.0 97 1.5 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 486255.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.285699194735514 #Duplication Level Percentage of deduplicated Percentage of total 1 77.26060117986722 21.081095233982847 2 9.354531602985713 5.104898708534303 3 3.3203075872756957 2.71790742181208 4 1.5890995843988724 1.7343877300154737 5 0.8958472838232763 1.2221909755411384 6 0.6366073751102009 1.0422166405444258 7 0.4559948577640186 0.8709496966306651 8 0.3112692562063004 0.6794559434731338 9 0.27717538569117867 0.680663177833887 >10 4.341569212116707 30.18102726383493 >50 1.416897265796426 26.323183334873207 >100 0.1317691738367601 5.155079855236373 >500 0.004543764615060693 0.7141236163098005 >1k 0.0037864705125505776 2.4928204013777298 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCC 2890 0.5943383615592642 No Hit CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT 2825 0.5809708897594883 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGT 2633 0.5414854345970735 No Hit AATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT 2326 0.4783498370196707 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1390 0.2858582431028987 No Hit AATGACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTT 645 0.13264645093623717 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 635 0.13058991681319473 No Hit AATGATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCT 560 0.11516591089037645 No Hit AAACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT 559 0.11496025747807222 No Hit CCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC 548 0.11269806994272553 No Hit AACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG 509 0.10467758686286002 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6595304932597094 0.0 2 0.0 0.0 0.0 0.9017902129541084 0.0 3 0.0 0.0 0.0 1.2705267812156174 0.0 4 0.0 0.0 0.0 2.896011352068359 0.0 5 0.0 0.0 0.0 3.141561526359626 0.0 6 0.0 0.0 0.0 4.358207113551532 0.0 7 0.0 0.0 0.0 5.239226331862912 0.0 8 0.0 0.0 0.0 6.02667324757586 0.0 9 0.0 0.0 0.0 7.382957501722347 0.0 10 0.0 0.0 0.0 8.731632579613578 0.0 11 0.0 0.0 0.0 10.476396129602781 0.0 12 0.0 0.0 0.0 11.102405116656898 0.0 13 0.0 0.0 0.0 11.403481712270311 0.0 14 0.0 0.0 0.0 11.781061377260903 0.0 15 0.0 0.0 0.0 12.044709051834943 0.0 16 0.0 0.0 0.0 12.559870849657074 0.0 17 0.0 0.0 0.0 13.123155545958396 0.0 18 0.0 0.0 0.0 14.077387379050087 0.0 19 0.0 0.0 0.0 14.420211617361261 0.0 20 2.0565341230424365E-4 0.0 0.0 14.791827333395029 0.0 21 2.0565341230424365E-4 0.0 0.0 15.175576600754749 0.0 22 2.0565341230424365E-4 0.0 0.0 15.548220583850037 0.0 23 2.0565341230424365E-4 0.0 0.0 15.950273004904833 0.0 24 2.0565341230424365E-4 0.0 0.0 16.2490874129829 0.0 25 2.0565341230424365E-4 0.0 0.0 16.517259462627635 0.0 26 2.0565341230424365E-4 0.0 0.0 16.771652733647983 0.0 27 2.0565341230424365E-4 0.0 0.0 17.062035351821574 0.0 28 2.0565341230424365E-4 0.0 0.0 17.365785441794944 0.0 29 2.0565341230424365E-4 0.0 0.0 17.643417548405672 0.0 30 2.0565341230424365E-4 0.0 0.0 18.07714059495532 0.0 31 2.0565341230424365E-4 0.0 0.0 18.3377034683448 0.0 32 2.0565341230424365E-4 0.0 0.0 18.649062734573423 0.0 33 2.0565341230424365E-4 0.0 0.0 18.94931671653762 0.0 34 2.0565341230424365E-4 0.0 0.0 19.218517033243874 0.0 35 2.0565341230424365E-4 0.0 0.0 19.523912350515676 0.0 36 2.0565341230424365E-4 0.0 0.0 19.78488653072976 0.0 37 2.0565341230424365E-4 0.0 0.0 20.05429250084832 0.0 38 2.0565341230424365E-4 0.0 0.0 20.328634152862183 0.0 39 2.0565341230424365E-4 0.0 0.0 20.609762367482084 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGA 20 7.029266E-4 45.000004 18 CTTCGAT 20 7.029266E-4 45.000004 19 GATACGA 20 7.029266E-4 45.000004 40 AGTCCGT 20 7.029266E-4 45.000004 33 GGTCGCT 20 7.029266E-4 45.000004 8 CGAAAAC 20 7.029266E-4 45.000004 26 CTATACG 20 7.029266E-4 45.000004 1 GACCGTC 20 7.029266E-4 45.000004 16 CGCGACT 20 7.029266E-4 45.000004 28 CGTTATG 20 7.029266E-4 45.000004 21 ATGTACC 20 7.029266E-4 45.000004 43 TAGCACG 40 6.8012014E-9 45.000004 1 TGCGACG 20 7.029266E-4 45.000004 1 CGCTAAG 20 7.029266E-4 45.000004 1 CGAATCC 20 7.029266E-4 45.000004 30 CATACGT 20 7.029266E-4 45.000004 22 CATACGA 20 7.029266E-4 45.000004 18 AATTCCG 20 7.029266E-4 45.000004 1 CTCGACG 20 7.029266E-4 45.000004 21 CGTCGAC 20 7.029266E-4 45.000004 37 >>END_MODULE