SRR3553044_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553044_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	726721
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCC	5190	0.7141667847771016	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGT	4691	0.6455021941020007	No Hit
AATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	4301	0.5918364819511202	No Hit
CTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTGCT	3421	0.47074461863631295	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1700	0.23392746322178662	No Hit
ACCCGTGAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCGTAGTC	1414	0.1945726076444743	No Hit
ACCCGTGAATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCC	1197	0.16471245498616388	No Hit
AATGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTT	1196	0.1645748505960334	No Hit
ACCCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCT	1119	0.1539793125559878	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCT	1117	0.15370410377572685	No Hit
ACCCGTGAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAG	1019	0.14021887354294152	No Hit
AACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTATGCCGTCTTCTG	992	0.13650355500941902	No Hit
ACCCGTGAATGATACCTGTCTCTTATACACATCTGACGCCAGCGTAGTCGT	972	0.13375146720680978	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCGTAGTC	946	0.13017375306341772	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCGTAGTCGTAT	840	0.11558768770958869	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	784	0.10788184186228277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGTACG	35	1.2111013E-7	45.000004	1
TGTCGAA	35	1.2111013E-7	45.000004	39
ATCGCAA	35	1.2111013E-7	45.000004	29
TTGATCG	20	7.0315733E-4	45.0	25
CTGTCGT	20	7.0315733E-4	45.0	41
GGTACGA	40	6.8084773E-9	45.0	9
TCCGCGC	20	7.0315733E-4	45.0	44
CGTATAA	20	7.0315733E-4	45.0	4
CAACGGT	20	7.0315733E-4	45.0	41
CGAAACG	40	6.8084773E-9	45.0	1
CGTTGCC	20	7.0315733E-4	45.0	12
CGCATAA	20	7.0315733E-4	45.0	12
ATTCGGT	20	7.0315733E-4	45.0	31
TTCGTAC	20	7.0315733E-4	45.0	33
CAATTCG	20	7.0315733E-4	45.0	44
TTCCGCA	20	7.0315733E-4	45.0	13
TCGATAC	20	7.0315733E-4	45.0	25
ATTCCGC	20	7.0315733E-4	45.0	24
CCCGTTG	20	7.0315733E-4	45.0	32
TACGATT	40	6.8084773E-9	45.0	11