SRR3553041_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553041_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527915
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	4205	0.7965297443717265	TruSeq Adapter, Index 22 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	3554	0.6732144379303486	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGT	3525	0.6677211293484747	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCC	3201	0.6063476127785723	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1731	0.3278936950077191	No Hit
AAACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	1206	0.2284458672324143	TruSeq Adapter, Index 23 (95% over 21bp)
AATGACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	919	0.1740810547152477	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTT	886	0.16783004839794285	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	867	0.1642309841546461	TruSeq Adapter, Index 23 (95% over 23bp)
AACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTG	851	0.16120019321292253	TruSeq Adapter, Index 23 (95% over 22bp)
AATGATCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCT	797	0.15097127378460548	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCTACTC	605	0.11460178248392261	No Hit
AACCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCT	595	0.11270753814534536	No Hit
CACCCTGGGAACTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGC	551	0.10437286305560553	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTA	30	2.1632623E-6	45.000004	21
CGAAACG	30	2.1632623E-6	45.000004	1
GTAATCA	30	2.1632623E-6	45.000004	21
CGTTACG	45	3.8380676E-10	45.000004	1
AATTGCG	30	2.1632623E-6	45.000004	1
GACGGTA	30	2.1632623E-6	45.000004	4
ACGTCCC	30	2.1632623E-6	45.000004	39
TCGAAAG	45	3.8380676E-10	45.000004	1
ACGGTAA	30	2.1632623E-6	45.000004	5
AATCCGA	20	7.0298184E-4	45.0	31
ACTTGCG	25	3.8879298E-5	45.0	1
ACGCAGA	20	7.0298184E-4	45.0	2
CGATTGG	20	7.0298184E-4	45.0	2
ATCACGT	20	7.0298184E-4	45.0	36
CGTTCAT	55	1.8189894E-12	45.0	17
CATTACG	20	7.0298184E-4	45.0	1
ATCCGAA	20	7.0298184E-4	45.0	32
ATATCCG	25	3.8879298E-5	45.0	1
GTTCGCA	20	7.0298184E-4	45.0	15
TACGATG	20	7.0298184E-4	45.0	1