SRR3553040_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553040_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	421283
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC	2641	0.6268945103410296	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGT	2578	0.6119401922223304	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	2301	0.546188666525827	No Hit
AATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	2199	0.5219769133812663	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1407	0.33397977131761786	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	636	0.15096740196020253	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT	601	0.14265944744981401	No Hit
AAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	589	0.1398110059033951	No Hit
GCAATTGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	542	0.1286546098465877	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGTGGCTTC	506	0.12010928520733094	No Hit
AACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	461	0.10942762940826	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	459	0.10895288915052354	No Hit
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	450	0.10681655799070933	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT	445	0.10562970734636812	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT	433	0.1027812657999492	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACTTCG	20	7.0281915E-4	45.000004	29
ATAGCGA	20	7.0281915E-4	45.000004	12
ATTCGGC	20	7.0281915E-4	45.000004	17
AAGCGCG	20	7.0281915E-4	45.000004	1
ATCCGTT	20	7.0281915E-4	45.000004	28
TCTACGT	20	7.0281915E-4	45.000004	28
TCTACCG	20	7.0281915E-4	45.000004	25
GTATGCG	20	7.0281915E-4	45.000004	1
TACGAAG	20	7.0281915E-4	45.000004	1
TGCGACG	20	7.0281915E-4	45.000004	1
TATTCCG	20	7.0281915E-4	45.000004	1
GTCGTTT	20	7.0281915E-4	45.000004	23
TCGTCGG	20	7.0281915E-4	45.000004	13
AATCTGA	20	7.0281915E-4	45.000004	35
TGTTACG	20	7.0281915E-4	45.000004	1
GGACGTA	20	7.0281915E-4	45.000004	9
GCGATTG	20	7.0281915E-4	45.000004	1
CATAACG	20	7.0281915E-4	45.000004	1
CAGTACG	20	7.0281915E-4	45.000004	1
ATCGGAC	20	7.0281915E-4	45.000004	40