##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553040_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 421283 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85931547202237 33.0 31.0 34.0 30.0 34.0 2 32.061194019222235 33.0 31.0 34.0 30.0 34.0 3 32.21047371956618 34.0 31.0 34.0 30.0 34.0 4 35.87025586126191 37.0 35.0 37.0 35.0 37.0 5 35.63021057104132 37.0 35.0 37.0 33.0 37.0 6 35.010456154176644 37.0 35.0 37.0 33.0 37.0 7 35.34251322745043 37.0 35.0 37.0 33.0 37.0 8 35.72810675958916 37.0 35.0 37.0 35.0 37.0 9 37.41386668818822 39.0 37.0 39.0 35.0 39.0 10 37.01314555773672 39.0 37.0 39.0 33.0 39.0 11 37.01223880384445 39.0 37.0 39.0 33.0 39.0 12 36.86922092750004 39.0 37.0 39.0 33.0 39.0 13 36.882214568354286 39.0 37.0 39.0 33.0 39.0 14 38.047262766358955 40.0 37.0 41.0 33.0 41.0 15 38.093037222009904 40.0 37.0 41.0 33.0 41.0 16 37.95555481707071 40.0 37.0 41.0 33.0 41.0 17 37.95792377095682 40.0 37.0 41.0 33.0 41.0 18 37.9282074045238 40.0 37.0 41.0 33.0 41.0 19 37.88979854397163 40.0 37.0 41.0 33.0 41.0 20 37.87004222814593 40.0 37.0 41.0 33.0 41.0 21 37.838400789967785 40.0 37.0 41.0 33.0 41.0 22 37.80296855083163 40.0 36.0 41.0 33.0 41.0 23 37.6658065955664 39.0 36.0 41.0 33.0 41.0 24 37.55559327103159 39.0 36.0 41.0 32.0 41.0 25 37.59643754910594 39.0 36.0 41.0 33.0 41.0 26 37.52023699033666 39.0 36.0 41.0 33.0 41.0 27 37.43056567675411 39.0 36.0 41.0 32.0 41.0 28 37.38865323309984 39.0 36.0 41.0 32.0 41.0 29 37.15618004999015 39.0 35.0 41.0 32.0 41.0 30 37.23045316331302 39.0 36.0 41.0 32.0 41.0 31 37.12317135986973 39.0 35.0 41.0 32.0 41.0 32 37.11044119985853 39.0 35.0 41.0 32.0 41.0 33 36.83975142600105 39.0 35.0 41.0 31.0 41.0 34 36.81943016926864 39.0 35.0 41.0 31.0 41.0 35 36.773119257126446 39.0 35.0 41.0 31.0 41.0 36 36.70569427202142 39.0 35.0 41.0 31.0 41.0 37 36.58957517868036 39.0 35.0 40.0 31.0 41.0 38 36.36554999845709 39.0 35.0 40.0 30.0 41.0 39 36.37575216659585 39.0 35.0 40.0 30.0 41.0 40 36.27539444981165 38.0 35.0 40.0 30.0 41.0 41 36.24229793274355 38.0 35.0 40.0 30.0 41.0 42 36.172444651220204 38.0 35.0 40.0 30.0 41.0 43 36.111025130375545 38.0 35.0 40.0 30.0 41.0 44 35.99810816007292 38.0 35.0 40.0 30.0 41.0 45 35.71994597455867 38.0 35.0 40.0 29.0 41.0 46 35.57064016350054 38.0 34.0 40.0 29.0 41.0 47 35.43087663162292 38.0 34.0 40.0 28.0 41.0 48 35.33665968007254 37.0 34.0 40.0 28.0 41.0 49 35.225945504565814 37.0 34.0 40.0 27.0 41.0 50 35.110716549208014 37.0 34.0 40.0 27.0 41.0 51 33.8092873436621 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 2.0 10 3.0 11 5.0 12 3.0 13 9.0 14 17.0 15 27.0 16 37.0 17 100.0 18 167.0 19 387.0 20 622.0 21 985.0 22 1445.0 23 1771.0 24 2101.0 25 2441.0 26 2963.0 27 3501.0 28 4412.0 29 5508.0 30 7226.0 31 9634.0 32 13046.0 33 17884.0 34 27518.0 35 34268.0 36 41514.0 37 59236.0 38 86781.0 39 97645.0 40 23.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.154385531815905 34.419143426152964 19.40121011291697 26.025260929114157 2 23.016119805451442 32.7079421671418 19.66848887802261 24.60744914938414 3 20.824006665353217 28.98621591661662 22.849248604857067 27.340528813173094 4 22.2069250361396 32.145137591595194 18.50679946734143 27.141137904923767 5 17.712084275890554 35.48161212296722 16.984782201038257 29.82152140010397 6 19.627186475599537 37.495460296285394 20.327665725889723 22.549687502225346 7 82.31189010712514 7.507067695587052 5.804649131344013 4.3763930659437955 8 83.49280649824465 5.097048777187782 4.476563260326194 6.933581464241377 9 77.99958697597576 8.155325517526224 8.688933567222033 5.156153939275974 10 36.717123643726424 31.46364795161447 14.612742503257905 17.206485901401194 11 27.399396605132413 28.401810659343006 23.951832853450057 20.24695988207452 12 27.06850264549009 23.62283785483867 29.125789552391147 20.182869947280093 13 25.677276320193315 25.364897230602708 26.53584407630975 22.42198237289423 14 20.810951308265466 27.060669431237432 29.05386640334407 23.074512857153028 15 20.019321928489873 28.414391276173024 27.444022189359647 24.122264605977456 16 21.525910136416613 27.26908040438375 28.36335669846635 22.841652760733282 17 20.899965106591058 26.70224053664639 27.548227675932807 24.849566680829753 18 22.811981494624753 25.888773105014916 25.794774533983094 25.504470866377233 19 22.6531808784119 29.41182055767738 25.96283258522181 21.97216597868891 20 25.64807979434252 27.194546183919122 25.108062751167264 22.04931127057109 21 24.665367460827994 27.927782511993126 24.620267136343028 22.786582890835852 22 22.97078211083761 27.363553715673312 24.235727527576476 25.429936645912605 23 23.218121785118317 28.38115945813147 23.732977594633535 24.667741162116677 24 21.639135687886764 28.039583842690067 25.814950994936897 24.50632947448627 25 22.882955163156357 27.764234493202906 24.02992762584771 25.32288271779303 26 25.46079476266548 27.512622156602568 24.378386975026288 22.648196105705665 27 22.431951918306698 26.5339451152788 25.459607912021138 25.574495054393363 28 23.055048506585834 27.48152666972083 27.581934234232097 21.88149058946124 29 24.59296957152318 28.26223702356848 23.45834035553298 23.686453049375363 30 25.494738691093637 24.19181405373585 25.93624713078857 24.377200124381947 31 25.714068690167892 25.948590377489715 23.99622106754842 24.341119864793974 32 26.591388686464917 24.739189570906017 24.43772950724335 24.231692235385715 33 25.778633365220056 24.26041402097877 25.42827505501053 24.532677558790645 34 24.43488106569693 24.185405060256407 26.296100246152825 25.083613627893836 35 26.557207387907887 22.879394611223333 28.003503583102095 22.559894417766678 36 26.944358068091994 25.702674923982215 25.63193862557948 21.721028382346308 37 26.14442073380602 25.203248172843434 24.945226842763653 23.707104250586898 38 25.966155767025967 25.28205505562769 26.939135925256895 21.81265325208945 39 25.692942748698616 22.74765418970146 25.07696726428553 26.482435797314395 40 26.39152303795786 23.842405224041798 26.132552227362606 23.633519510637743 41 22.405366463873452 22.073523023715648 29.549732602549827 25.971377909861065 42 25.429461905654872 23.887505548526764 26.490506381695916 24.192526164122455 43 23.851425288938792 23.398997823315916 27.755689168563652 24.993887719181643 44 25.498061872897793 22.04290227709165 25.590161482898672 26.868874367111893 45 26.488370050536105 22.92425756557943 26.912787840952518 23.67458454293195 46 23.19462214236036 22.800825098567945 29.320670428191974 24.683882330879715 47 24.00286743115673 25.119931257610677 26.594711868269073 24.282489442963517 48 23.858546392804836 23.696185224658958 28.297842542898717 24.14742583963749 49 23.869228048603908 23.337518959939043 28.24253530287242 24.550717688584633 50 23.392588829836473 22.689023767871003 27.37898277404975 26.539404628242774 51 23.549727855147253 22.553722794416107 28.628736502541045 25.267812847895595 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1790.0 1 1501.5 2 1213.0 3 877.0 4 541.0 5 514.5 6 488.0 7 492.5 8 497.0 9 564.5 10 632.0 11 694.5 12 757.0 13 812.0 14 867.0 15 792.5 16 718.0 17 834.5 18 951.0 19 932.0 20 913.0 21 927.0 22 941.0 23 1357.5 24 1774.0 25 2107.5 26 2591.5 27 2742.0 28 4087.0 29 5432.0 30 5838.0 31 6244.0 32 6030.0 33 5816.0 34 8314.0 35 10812.0 36 11204.5 37 11597.0 38 12141.5 39 12686.0 40 13227.0 41 13768.0 42 14819.5 43 15871.0 44 18287.0 45 20703.0 46 26264.0 47 31825.0 48 33711.0 49 35597.0 50 37362.5 51 39128.0 52 37451.0 53 35774.0 54 32172.5 55 28571.0 56 26585.0 57 24599.0 58 23004.5 59 21410.0 60 19943.5 61 18477.0 62 17715.0 63 16953.0 64 14588.0 65 12223.0 66 11010.0 67 9797.0 68 8346.5 69 6896.0 70 6353.5 71 5811.0 72 5473.0 73 5135.0 74 4378.5 75 3135.0 76 2648.0 77 2014.5 78 1381.0 79 1061.0 80 741.0 81 521.5 82 302.0 83 192.0 84 82.0 85 73.0 86 64.0 87 46.5 88 29.0 89 21.5 90 14.0 91 8.0 92 2.0 93 1.5 94 1.0 95 4.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 421283.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.931413981746445 #Duplication Level Percentage of deduplicated Percentage of total 1 73.40113530994869 18.29994091142517 2 11.079554212879597 5.524579056290082 3 3.839965935908675 2.8720734127183083 4 1.8282432385566876 1.823227561591424 5 1.03756344281057 1.2933961862518213 6 0.7065739358718036 1.0569532382359141 7 0.533158303512962 0.9304673267881094 8 0.391645743023356 0.7811425722803179 9 0.33683506653496903 0.7557997038617179 >10 5.180084201314204 33.08176136914374 >50 1.527716250494214 25.241769016309014 >100 0.12755882587296763 4.860521947596371 >500 0.004982766635662798 0.7140591973312871 >1k 0.004982766635662798 2.7643085001767225 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC 2641 0.6268945103410296 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGT 2578 0.6119401922223304 No Hit CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT 2301 0.546188666525827 No Hit AATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT 2199 0.5219769133812663 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1407 0.33397977131761786 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 636 0.15096740196020253 No Hit AATGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT 601 0.14265944744981401 No Hit AAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT 589 0.1398110059033951 No Hit GCAATTGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 542 0.1286546098465877 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGTGGCTTC 506 0.12010928520733094 No Hit AACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG 461 0.10942762940826 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 459 0.10895288915052354 No Hit CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC 450 0.10681655799070933 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT 445 0.10562970734636812 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT 433 0.1027812657999492 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6038696078408101 0.0 2 0.0 0.0 0.0 0.8341186328430058 0.0 3 0.0 0.0 0.0 1.1809163911195086 0.0 4 0.0 0.0 0.0 2.757766157191247 0.0 5 0.0 0.0 0.0 2.987540441935706 0.0 6 0.0 0.0 0.0 4.181037449885231 0.0 7 0.0 0.0 0.0 5.053847413733761 0.0 8 0.0 0.0 0.0 5.7913564041273915 0.0 9 0.0 0.0 0.0 7.1980117878006 0.0 10 0.0 0.0 0.0 8.65166645698972 0.0 11 0.0 0.0 0.0 10.401796417135275 0.0 12 0.0 0.0 0.0 11.037473622244429 0.0 13 0.0 0.0 0.0 11.336322614489548 0.0 14 0.0 0.0 0.0 11.717539041451946 0.0 15 0.0 0.0 0.0 11.982444105268904 0.0 16 0.0 0.0 0.0 12.482820336923162 0.0 17 0.0 0.0 0.0 13.054882347495626 0.0 18 0.0 0.0 0.0 14.026438284953345 0.0 19 0.0 0.0 0.0 14.354958543306994 0.0 20 0.0 0.0 0.0 14.740685002717887 0.0 21 0.0 0.0 0.0 15.104336040144036 0.0 22 0.0 0.0 0.0 15.477244512596046 0.0 23 0.0 0.0 0.0 15.839708699377853 0.0 24 0.0 0.0 0.0 16.137845581236366 0.0 25 0.0 0.0 0.0 16.398003242475962 0.0 26 0.0 0.0 0.0 16.653650871267057 0.0 27 0.0 0.0 0.0 16.921404376630438 0.0 28 0.0 0.0 0.0 17.179900446967952 0.0 29 0.0 0.0 0.0 17.43982073807868 0.0 30 0.0 0.0 0.0 17.880617067387007 0.0 31 2.3737012886824297E-4 0.0 0.0 18.134128365018288 0.0 32 2.3737012886824297E-4 0.0 0.0 18.434638948165485 0.0 33 2.3737012886824297E-4 0.0 0.0 18.730639498864186 0.0 34 2.3737012886824297E-4 0.0 0.0 18.97204491992319 0.0 35 2.3737012886824297E-4 0.0 0.0 19.26211121740018 0.0 36 2.3737012886824297E-4 0.0 0.0 19.497345015108607 0.0 37 2.3737012886824297E-4 0.0 0.0 19.74990683222442 0.0 38 2.3737012886824297E-4 0.0 0.0 20.026917772613658 0.0 39 2.3737012886824297E-4 0.0 0.0 20.302504492229687 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACTTCG 20 7.0281915E-4 45.000004 29 ATAGCGA 20 7.0281915E-4 45.000004 12 ATTCGGC 20 7.0281915E-4 45.000004 17 AAGCGCG 20 7.0281915E-4 45.000004 1 ATCCGTT 20 7.0281915E-4 45.000004 28 TCTACGT 20 7.0281915E-4 45.000004 28 TCTACCG 20 7.0281915E-4 45.000004 25 GTATGCG 20 7.0281915E-4 45.000004 1 TACGAAG 20 7.0281915E-4 45.000004 1 TGCGACG 20 7.0281915E-4 45.000004 1 TATTCCG 20 7.0281915E-4 45.000004 1 GTCGTTT 20 7.0281915E-4 45.000004 23 TCGTCGG 20 7.0281915E-4 45.000004 13 AATCTGA 20 7.0281915E-4 45.000004 35 TGTTACG 20 7.0281915E-4 45.000004 1 GGACGTA 20 7.0281915E-4 45.000004 9 GCGATTG 20 7.0281915E-4 45.000004 1 CATAACG 20 7.0281915E-4 45.000004 1 CAGTACG 20 7.0281915E-4 45.000004 1 ATCGGAC 20 7.0281915E-4 45.000004 40 >>END_MODULE