SRR3553039_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553039_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430052
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC	3086	0.7175876405643968	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGT	2949	0.6857310278756987	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	2612	0.6073684112618939	No Hit
AATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	2474	0.5752792685535703	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1521	0.3536781598504367	No Hit
AATGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT	657	0.1527722228939756	No Hit
AAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	638	0.1483541525210905	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	623	0.14486620222670749	No Hit
AACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG	579	0.134634881363184	No Hit
GCAATTGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	570	0.13254211118655418	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGTGGCTTC	532	0.12370597044078391	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT	530	0.12324091040153283	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTAT	478	0.11114934938100508	No Hit
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	472	0.10975416926325189	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	451	0.10487103885111568	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTCC	35	1.2095552E-7	45.000004	43
CGCATTA	35	1.2095552E-7	45.000004	17
ATTCGAT	35	1.2095552E-7	45.000004	27
TATGCGG	35	1.2095552E-7	45.000004	2
TATTCGA	35	1.2095552E-7	45.000004	26
ATGAACG	45	3.8380676E-10	45.000004	1
CACGTTC	35	1.2095552E-7	45.000004	42
TCACGCC	20	7.0283574E-4	45.0	43
ACGCCTA	20	7.0283574E-4	45.0	12
CATATAG	20	7.0283574E-4	45.0	1
GGTGTCG	20	7.0283574E-4	45.0	7
TACTTCG	25	3.8867205E-5	45.0	29
CCGATTC	25	3.8867205E-5	45.0	10
CGACGAA	20	7.0283574E-4	45.0	33
CTATCGG	20	7.0283574E-4	45.0	2
CCCTACG	20	7.0283574E-4	45.0	31
TAGAACG	25	3.8867205E-5	45.0	1
CAACCGA	20	7.0283574E-4	45.0	25
CGACACG	25	3.8867205E-5	45.0	1
CGTTATG	25	3.8867205E-5	45.0	1