##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553039_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 430052 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.853547943039448 33.0 31.0 34.0 30.0 34.0 2 32.05990670895613 33.0 31.0 34.0 30.0 34.0 3 32.18769358124134 34.0 31.0 34.0 30.0 34.0 4 35.848560174118475 37.0 35.0 37.0 35.0 37.0 5 35.61968320110126 37.0 35.0 37.0 33.0 37.0 6 35.64223861300494 37.0 35.0 37.0 33.0 37.0 7 35.65082594662971 37.0 35.0 37.0 35.0 37.0 8 35.70053388892506 37.0 35.0 37.0 35.0 37.0 9 37.43158966822617 39.0 37.0 39.0 35.0 39.0 10 37.01134048905714 39.0 37.0 39.0 33.0 39.0 11 37.012721717373715 39.0 37.0 39.0 33.0 39.0 12 36.90879940100267 39.0 37.0 39.0 33.0 39.0 13 36.90471617385805 39.0 37.0 39.0 33.0 39.0 14 38.06089961213993 40.0 37.0 41.0 33.0 41.0 15 38.10561513491392 40.0 37.0 41.0 33.0 41.0 16 37.97403569800861 40.0 37.0 41.0 33.0 41.0 17 37.95064550333448 40.0 37.0 41.0 33.0 41.0 18 37.88389311060058 40.0 37.0 41.0 33.0 41.0 19 37.866483588031215 40.0 37.0 41.0 33.0 41.0 20 37.85743351966739 40.0 37.0 41.0 33.0 41.0 21 37.80454921730395 40.0 36.0 41.0 33.0 41.0 22 37.76312166900747 40.0 36.0 41.0 33.0 41.0 23 37.590503008938455 39.0 36.0 41.0 33.0 41.0 24 37.49127547366365 39.0 36.0 41.0 32.0 41.0 25 37.523332062169224 39.0 36.0 41.0 32.0 41.0 26 37.44562750551096 39.0 36.0 41.0 32.0 41.0 27 37.396668309878805 39.0 36.0 41.0 32.0 41.0 28 37.326679099271715 39.0 36.0 41.0 32.0 41.0 29 37.16323142317673 39.0 35.0 41.0 31.0 41.0 30 37.2148530875336 39.0 36.0 41.0 32.0 41.0 31 37.08879158799401 39.0 35.0 41.0 31.0 41.0 32 37.05992996195809 39.0 35.0 41.0 31.0 41.0 33 36.94928520271967 39.0 35.0 41.0 31.0 41.0 34 36.892485094825744 39.0 35.0 41.0 31.0 41.0 35 36.81909397003153 39.0 35.0 41.0 31.0 41.0 36 36.695822830727444 39.0 35.0 41.0 31.0 41.0 37 36.57237264330825 39.0 35.0 40.0 30.0 41.0 38 36.46058616167347 39.0 35.0 40.0 30.0 41.0 39 36.39084575818738 39.0 35.0 40.0 30.0 41.0 40 36.26369834345614 38.0 35.0 40.0 30.0 41.0 41 36.19675062550575 38.0 35.0 40.0 30.0 41.0 42 36.11911815315357 38.0 35.0 40.0 30.0 41.0 43 36.04674085924493 38.0 35.0 40.0 30.0 41.0 44 35.95513565801345 38.0 35.0 40.0 30.0 41.0 45 35.69573679462019 38.0 35.0 40.0 29.0 41.0 46 35.54689897965827 38.0 34.0 40.0 29.0 41.0 47 35.365334889734264 37.0 34.0 40.0 28.0 41.0 48 35.296219992000964 37.0 34.0 40.0 28.0 41.0 49 35.120478453768385 37.0 34.0 40.0 27.0 41.0 50 35.010894031419454 37.0 34.0 40.0 27.0 41.0 51 33.62764270367305 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 7.0 10 5.0 11 2.0 12 6.0 13 8.0 14 11.0 15 28.0 16 46.0 17 90.0 18 186.0 19 358.0 20 618.0 21 900.0 22 1376.0 23 1725.0 24 2147.0 25 2563.0 26 3103.0 27 3759.0 28 4538.0 29 5779.0 30 7595.0 31 9872.0 32 13126.0 33 18401.0 34 28221.0 35 34906.0 36 42262.0 37 59699.0 38 88930.0 39 99761.0 40 24.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.17849004306456 34.60279222047566 19.31510608019495 25.903611656264825 2 22.724461227944527 32.89020862593361 19.64948424841647 24.735845897705396 3 20.858175290429994 28.79628510040646 23.059769516244547 27.285770092918998 4 22.3198589937961 31.853357268423355 18.62123650163236 27.205547236148185 5 17.676467031893818 35.41618222912578 17.248379265763212 29.658971473217193 6 20.096639476156373 36.19585538493019 20.834922288467443 22.872582850445994 7 81.78848139294783 7.632797894208141 5.9739287341995855 4.604791978644443 8 82.73836652311813 5.144959214234557 4.769888292578572 7.346785970068735 9 77.55108684531173 8.066466380809763 9.004027419939915 5.378419353938593 10 36.81926836754625 31.177625031391553 14.756587575455992 17.246519025606204 11 27.278329132290978 28.217982941597757 24.201259382586294 20.302428543524968 12 26.746067917368133 23.521341605201233 29.411559532335623 20.32103094509501 13 25.509938333038797 25.25880591184322 26.623059536986226 22.60819621813176 14 20.763303042422777 26.922325672244284 29.365053528410517 22.94931775692242 15 19.802721531349697 28.316808199938613 27.49179169030722 24.38867857840447 16 21.298587147600756 27.273213471859215 28.500739445462408 22.927459935077618 17 20.694009096574366 26.670960721029086 27.84198189986327 24.793048282533274 18 22.723066047826773 25.740608112507324 25.886404434812533 25.649921404853366 19 22.39333847999777 29.399235441295474 26.281007878117062 21.926418200589694 20 25.59132383990773 27.31483634537219 25.030228902551322 22.06361091216876 21 24.45169421372299 27.906857775338796 24.744682038451163 22.89676597248705 22 22.768409401653752 27.612939830532124 24.12173411587436 25.496916651939767 23 23.268581473868277 28.391217806218783 23.637141554974747 24.703059164938193 24 21.468334061927393 28.139387794964332 25.821063499297757 24.571214643810517 25 22.67795522401942 27.711765088872976 24.173588310250853 25.43669137685675 26 25.408090184442813 27.514114572191268 24.32589547310558 22.75189977026034 27 22.494489038534876 26.360533144828995 25.655269595304752 25.489708221331377 28 23.01419363239794 27.307627914763792 27.76361928324947 21.91455916958879 29 24.689572423799913 28.098229981490608 23.541106656869403 23.671090937840074 30 25.666198506227154 23.905481197622613 25.940816459404907 24.487503836745326 31 25.67549970701217 25.68945150818971 24.22893045492173 24.406118329876385 32 26.60375954535731 24.57144717383014 24.44402072307535 24.380772557737203 33 25.955930910680568 24.130802786639755 25.58202263912271 24.331243663556965 34 24.453786983899622 23.957335391999106 26.2721717373713 25.316705886729977 35 26.635151098006755 22.5921516467776 28.26960460595463 22.50309264926102 36 27.135788230260527 25.454131128328665 25.77246472519602 21.637615916214784 37 26.325421111865545 25.006975900588767 24.952563875996393 23.715039111549302 38 26.164510338284675 25.092081887771712 27.14485690102592 21.598550872917695 39 25.841293611005177 22.472166156650825 25.331355277966384 26.35518495437761 40 26.461683703366106 23.70736562090166 26.18799587026685 23.642954805465386 41 22.479607117278842 21.766902607126582 29.663854603629332 26.08963567196525 42 25.39995163375592 23.80456316910513 26.560508961706958 24.234976235431994 43 23.840372792127464 23.303460976812108 27.949178238910644 24.906987992149787 44 25.368792611126096 21.90897844911778 25.707588849720498 27.014640090035623 45 26.620501706770344 22.853747918856325 26.973482276561906 23.552268097811428 46 23.20277547831425 22.51030107986941 29.573167895975374 24.713755545840968 47 23.959893222214987 24.983722898626212 26.49842344646694 24.55796043269186 48 23.828746291146185 23.518318714946098 28.49562378503065 24.157311208877065 49 24.152195548445306 22.98884786025876 28.243793773776193 24.615162817519742 50 23.299042906439222 22.476119166984457 27.418079674085927 26.806758252490397 51 23.577846399970237 22.360319217210943 28.72885139471506 25.332982988103765 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1916.0 1 1562.5 2 1209.0 3 875.5 4 542.0 5 494.0 6 446.0 7 483.0 8 520.0 9 596.5 10 673.0 11 713.0 12 753.0 13 814.5 14 876.0 15 817.0 16 758.0 17 870.0 18 982.0 19 981.5 20 981.0 21 982.0 22 983.0 23 1317.5 24 1652.0 25 2047.0 26 2623.0 27 2804.0 28 4093.5 29 5383.0 30 5763.0 31 6143.0 32 6001.5 33 5860.0 34 8437.0 35 11014.0 36 11207.0 37 11400.0 38 12208.5 39 13017.0 40 13451.5 41 13886.0 42 14939.0 43 15992.0 44 18394.0 45 20796.0 46 26804.5 47 32813.0 48 35375.0 49 37937.0 50 39178.5 51 40420.0 52 38469.5 53 36519.0 54 32812.0 55 29105.0 56 27201.5 57 25298.0 58 23520.0 59 21742.0 60 20251.0 61 18760.0 62 18012.0 63 17264.0 64 14891.0 65 12518.0 66 11105.0 67 9692.0 68 8296.5 69 6901.0 70 6387.5 71 5874.0 72 5503.5 73 5133.0 74 4437.0 75 3175.0 76 2609.0 77 2013.0 78 1417.0 79 1067.5 80 718.0 81 528.0 82 338.0 83 218.0 84 98.0 85 77.0 86 56.0 87 43.0 88 30.0 89 26.5 90 23.0 91 12.5 92 2.0 93 3.5 94 5.0 95 6.0 96 7.0 97 5.0 98 3.0 99 2.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 430052.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.32133172897847 #Duplication Level Percentage of deduplicated Percentage of total 1 76.78804693138144 20.979517030326395 2 9.565998089823566 5.227116142616881 3 3.3612643986540967 2.7550265899330166 4 1.64295900990554 1.7955131250697314 5 0.9639810198054939 1.3168622611272431 6 0.6525205470542937 1.069663819562692 7 0.434429769134669 0.8308439884830275 8 0.336937654973128 0.7364468354803938 9 0.30187528999132335 0.7422871444771068 >10 4.471687005538635 31.323715542196567 >50 1.3639970840911777 24.918599093502383 >100 0.10604115261900066 4.385965028159123 >500 0.005986194099459714 0.9647160452412645 >1k 0.0042758529281855095 2.9537273538241866 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCC 3086 0.7175876405643968 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGT 2949 0.6857310278756987 No Hit CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT 2612 0.6073684112618939 No Hit AATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT 2474 0.5752792685535703 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1521 0.3536781598504367 No Hit AATGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTT 657 0.1527722228939756 No Hit AAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT 638 0.1483541525210905 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 623 0.14486620222670749 No Hit AACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTG 579 0.134634881363184 No Hit GCAATTGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 570 0.13254211118655418 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGTGGCTTC 532 0.12370597044078391 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT 530 0.12324091040153283 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTAT 478 0.11114934938100508 No Hit CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC 472 0.10975416926325189 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 451 0.10487103885111568 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6966599387980988 0.0 2 0.0 0.0 0.0 0.9263995981881261 0.0 3 0.0 0.0 0.0 1.3198403913945291 0.0 4 0.0 0.0 0.0 3.0342842260935887 0.0 5 0.0 0.0 0.0 3.291462427799429 0.0 6 0.0 0.0 0.0 4.564099225209975 0.0 7 0.0 0.0 0.0 5.496312073888739 0.0 8 0.0 0.0 0.0 6.296215341400575 0.0 9 0.0 0.0 0.0 7.834168891203855 0.0 10 0.0 0.0 0.0 9.325848967101653 0.0 11 0.0 0.0 0.0 11.20538911573484 0.0 12 0.0 0.0 0.0 11.910652665259084 0.0 13 0.0 0.0 0.0 12.225265781812432 0.0 14 0.0 0.0 0.0 12.619171635058086 0.0 15 0.0 0.0 0.0 12.879372727019058 0.0 16 0.0 0.0 0.0 13.389311060057853 0.0 17 0.0 0.0 0.0 13.993889111084242 0.0 18 0.0 0.0 0.0 14.988652535042274 0.0 19 0.0 0.0 0.0 15.323495763303043 0.0 20 0.0 0.0 0.0 15.709263065861803 0.0 21 0.0 0.0 0.0 16.09200747816543 0.0 22 0.0 0.0 0.0 16.48940128170547 0.0 23 0.0 0.0 0.0 16.8958637560109 0.0 24 0.0 0.0 0.0 17.20931422246612 0.0 25 0.0 0.0 0.0 17.467887604289714 0.0 26 0.0 0.0 0.0 17.7127417149554 0.0 27 0.0 0.0 0.0 17.998753639094808 0.0 28 0.0 0.0 0.0 18.27244147219406 0.0 29 0.0 0.0 0.0 18.563801586784855 0.0 30 0.0 0.0 0.0 19.02421102564341 0.0 31 0.0 0.0 0.0 19.27301814664273 0.0 32 0.0 0.0 0.0 19.580190302568063 0.0 33 0.0 0.0 0.0 19.86596969668784 0.0 34 0.0 0.0 0.0 20.11547440774604 0.0 35 0.0 0.0 0.0 20.392185131100426 0.0 36 0.0 0.0 0.0 20.657269353473534 0.0 37 0.0 0.0 0.0 20.91933068559151 0.0 38 0.0 0.0 0.0 21.201157069377658 0.0 39 0.0 0.0 0.0 21.46600876173114 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTCC 35 1.2095552E-7 45.000004 43 CGCATTA 35 1.2095552E-7 45.000004 17 ATTCGAT 35 1.2095552E-7 45.000004 27 TATGCGG 35 1.2095552E-7 45.000004 2 TATTCGA 35 1.2095552E-7 45.000004 26 ATGAACG 45 3.8380676E-10 45.000004 1 CACGTTC 35 1.2095552E-7 45.000004 42 TCACGCC 20 7.0283574E-4 45.0 43 ACGCCTA 20 7.0283574E-4 45.0 12 CATATAG 20 7.0283574E-4 45.0 1 GGTGTCG 20 7.0283574E-4 45.0 7 TACTTCG 25 3.8867205E-5 45.0 29 CCGATTC 25 3.8867205E-5 45.0 10 CGACGAA 20 7.0283574E-4 45.0 33 CTATCGG 20 7.0283574E-4 45.0 2 CCCTACG 20 7.0283574E-4 45.0 31 TAGAACG 25 3.8867205E-5 45.0 1 CAACCGA 20 7.0283574E-4 45.0 25 CGACACG 25 3.8867205E-5 45.0 1 CGTTATG 25 3.8867205E-5 45.0 1 >>END_MODULE