SRR3553035_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553035_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	554770
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	2918	0.5259837410097878	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1470	0.26497467418930365	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGT	1128	0.20332750509220038	No Hit
AATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT	1105	0.19918164284297998	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCC	1074	0.19359374155055248	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	949	0.17106188150044163	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	656	0.11824720154298178	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTTA	25	3.8881866E-5	45.000004	38
CGGCATC	25	3.8881866E-5	45.000004	33
CATTACG	25	3.8881866E-5	45.000004	1
ACGATCA	25	3.8881866E-5	45.000004	36
CCACTAA	25	3.8881866E-5	45.000004	25
TCATGCG	25	3.8881866E-5	45.000004	1
TATTAGG	35	1.2104101E-7	45.000004	2
GGACGTC	35	1.2104101E-7	45.000004	9
CGTACAT	25	3.8881866E-5	45.000004	45
TCGACAG	25	3.8881866E-5	45.000004	1
TAGCTAG	25	3.8881866E-5	45.000004	1
GCATCGT	25	3.8881866E-5	45.000004	35
GTCATAC	20	7.030128E-4	45.0	9
AGCCGAT	20	7.030128E-4	45.0	18
ATCTCGA	20	7.030128E-4	45.0	26
AGTTTCG	20	7.030128E-4	45.0	41
CGTATAG	20	7.030128E-4	45.0	1
ACGTTCA	20	7.030128E-4	45.0	22
TTAGCCG	20	7.030128E-4	45.0	1
AGGACGA	20	7.030128E-4	45.0	31