##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553035_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 554770 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.82387115381149 33.0 31.0 34.0 30.0 34.0 2 32.02804585684157 33.0 31.0 34.0 30.0 34.0 3 32.16540368080466 34.0 31.0 34.0 30.0 34.0 4 35.82121419687438 37.0 35.0 37.0 35.0 37.0 5 35.59579104854264 37.0 35.0 37.0 33.0 37.0 6 35.61955044432828 37.0 35.0 37.0 33.0 37.0 7 35.700856210681906 37.0 35.0 37.0 35.0 37.0 8 35.72017953386088 37.0 35.0 37.0 35.0 37.0 9 37.396423743172846 39.0 37.0 39.0 35.0 39.0 10 36.992840276150474 39.0 37.0 39.0 33.0 39.0 11 36.977596120914974 39.0 37.0 39.0 33.0 39.0 12 36.82892550065793 39.0 35.0 39.0 33.0 39.0 13 36.803594282315196 39.0 35.0 39.0 33.0 39.0 14 37.94585864412279 40.0 37.0 41.0 33.0 41.0 15 37.969535122663444 40.0 37.0 41.0 33.0 41.0 16 37.877208572922115 40.0 37.0 41.0 33.0 41.0 17 37.84162806207978 40.0 37.0 41.0 33.0 41.0 18 37.78447104205346 40.0 36.0 41.0 33.0 41.0 19 37.795407105647385 40.0 36.0 41.0 33.0 41.0 20 37.72749607945635 40.0 36.0 41.0 33.0 41.0 21 37.704010671088916 40.0 36.0 41.0 33.0 41.0 22 37.698752636227624 40.0 36.0 41.0 33.0 41.0 23 37.55265966076031 39.0 36.0 41.0 33.0 41.0 24 37.44139733583287 39.0 36.0 41.0 32.0 41.0 25 37.454747012275355 39.0 36.0 41.0 32.0 41.0 26 37.38531643744254 39.0 36.0 41.0 32.0 41.0 27 37.32346738287939 39.0 35.0 41.0 32.0 41.0 28 37.255150783207455 39.0 35.0 41.0 32.0 41.0 29 37.04566937649837 39.0 35.0 41.0 31.0 41.0 30 37.05007480577537 39.0 35.0 41.0 31.0 41.0 31 37.005665410891 39.0 35.0 41.0 31.0 41.0 32 36.91346864466355 39.0 35.0 41.0 31.0 41.0 33 36.820851884564775 39.0 35.0 41.0 31.0 41.0 34 36.70293635200173 39.0 35.0 41.0 31.0 41.0 35 36.627517710042 39.0 35.0 41.0 31.0 41.0 36 36.50529228328857 39.0 35.0 40.0 30.0 41.0 37 36.45143573012239 39.0 35.0 40.0 30.0 41.0 38 36.38217819997477 39.0 35.0 40.0 30.0 41.0 39 36.31618148061359 39.0 35.0 40.0 30.0 41.0 40 36.211734592714095 38.0 35.0 40.0 30.0 41.0 41 36.099300611064045 38.0 35.0 40.0 30.0 41.0 42 36.00101663752546 38.0 35.0 40.0 29.0 41.0 43 35.88813922886962 38.0 35.0 40.0 29.0 41.0 44 35.83388431241776 38.0 35.0 40.0 29.0 41.0 45 35.659911314598844 38.0 34.0 40.0 28.0 41.0 46 35.51263045946969 38.0 34.0 40.0 28.0 41.0 47 35.39161634551255 38.0 34.0 40.0 28.0 41.0 48 35.29430394577933 37.0 34.0 40.0 28.0 41.0 49 35.092382428754256 37.0 34.0 40.0 27.0 41.0 50 34.99348558862231 37.0 34.0 40.0 27.0 41.0 51 33.68304162085188 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 7.0 12 8.0 13 11.0 14 16.0 15 22.0 16 59.0 17 127.0 18 276.0 19 530.0 20 773.0 21 1201.0 22 1639.0 23 2198.0 24 2831.0 25 3430.0 26 4207.0 27 5208.0 28 6424.0 29 8213.0 30 10739.0 31 13366.0 32 17838.0 33 24082.0 34 38595.0 35 46639.0 36 50885.0 37 73814.0 38 110059.0 39 131532.0 40 38.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.22135299313229 30.987075725075258 21.244479694287723 27.54709158750473 2 24.235268669899238 30.011356057465257 19.610649458334084 26.14272581430142 3 20.77834057357103 30.856571191665015 21.27061665194585 27.0944715828181 4 20.98220884330443 31.068911440777256 19.468969122338986 28.479910593579323 5 18.43755069668511 33.82753213043243 17.681922238044596 30.052994934837862 6 20.516970996989745 37.002361338933255 19.934206968653676 22.546460695423328 7 84.71294410296159 5.45523370045244 5.418101195089857 4.413721001496115 8 85.18539214449231 5.003334715287417 4.398038826901239 5.413234313319033 9 78.94028155812319 7.613425383492258 8.466211222668854 4.980081835715702 10 37.99484471042053 30.911188420426484 13.751284316022858 17.342682553130125 11 29.061593092632982 27.238855742019215 23.499287993222417 20.200263172125386 12 28.50803035492186 21.83175009463381 29.1865097247508 20.473709825693533 13 27.588189700236132 22.365124285740038 26.77451917010653 23.2721668439173 14 21.94531066928637 25.972925716963786 28.698379508625194 23.383384105124648 15 21.643924509256088 27.902734466535684 28.591308109667068 21.86203291454116 16 24.316383366079634 25.277141878616366 27.36593543270184 23.04053932260216 17 22.736809849126665 25.0817455882618 28.112731402202712 24.068713160408816 18 24.576130648737315 25.37538078843485 26.658975791769564 23.38951277105828 19 24.34792797014979 30.420534635975272 24.64300520936604 20.588532184508896 20 26.05944805955621 27.33348955422968 23.976422661643564 22.630639724570543 21 25.216936748562468 27.999170827550156 24.737458766696108 22.04643365719127 22 23.04666798853579 26.527029219316113 25.30273807163329 25.123564720514807 23 24.07736539466806 26.69106116048092 24.66085044252573 24.570723002325288 24 23.788056311624636 26.445013248733712 24.974133424662472 24.792797014979183 25 25.00639904825423 25.41485660724264 23.535699479063396 26.04304486543973 26 23.098040629450043 26.885015411792274 25.13239720965445 24.88454674910323 27 20.969050237035166 26.48557059682391 25.191520810425942 27.353858355714983 28 23.905402238765614 26.793085422787822 26.442129170647295 22.85938316779927 29 24.17055716783532 29.824071236728734 23.35147899129369 22.653892604142257 30 24.99432197126737 26.106314328460446 24.866881770823944 24.03248192944824 31 25.189718261621934 27.508697297979346 23.17735277682643 24.12423166357229 32 26.430953368062436 25.888926942696973 23.416190493357607 24.263929195882977 33 24.781981722155127 26.576779566306758 25.04893920002884 23.592299511509275 34 23.051354615426213 27.08996521080808 25.110946878886747 24.74773329487896 35 24.069614434810823 27.751500621879337 25.431440056239524 22.747444887070316 36 22.665428916487915 30.43026839951692 24.651477188744884 22.252825495250285 37 23.454945292643796 30.186203291454117 22.795572940137355 23.563278475764733 38 24.310254700146004 27.751140112118534 24.177947617931757 23.760657569803705 39 24.27636678263064 25.344737458766698 23.635200173044684 26.74369558555798 40 24.756926293779404 25.016132811795877 24.19903743893866 26.027903455486058 41 22.663265857923104 24.569641473042882 26.576058546785152 26.19103412224886 42 24.5323287127999 26.878526236097844 22.882455792490582 25.706689258611675 43 21.783261531805973 25.791409052400095 26.04899327649296 26.37633613930097 44 24.086738648448907 23.285505705066964 24.935558880256682 27.692196766227443 45 24.480415307244442 24.805595111487644 26.474935558880258 24.239054022387656 46 22.284550354200842 25.277502388377165 27.955729401373542 24.482217856048454 47 23.220253438361844 25.852515456855997 25.340231086756678 25.587000018025485 48 22.965192782594592 24.352434342159814 27.954107107449932 24.728265767795662 49 24.24139733583287 23.861239793067398 27.039313589415432 24.858049281684302 50 22.79250860717054 22.30257584224093 26.88663770571588 28.018277844872653 51 22.59332696432756 22.654974133424663 29.30295437748977 25.44874452475801 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1846.0 1 1479.0 2 1112.0 3 794.0 4 476.0 5 463.0 6 450.0 7 506.0 8 562.0 9 632.5 10 703.0 11 778.5 12 854.0 13 847.0 14 840.0 15 839.5 16 839.0 17 957.5 18 1076.0 19 1223.5 20 1371.0 21 1353.5 22 1336.0 23 1786.0 24 2236.0 25 2689.5 26 3419.5 27 3696.0 28 4691.0 29 5686.0 30 6220.5 31 6755.0 32 7838.0 33 8921.0 34 10307.0 35 11693.0 36 12374.5 37 13056.0 38 15000.5 39 16945.0 40 17203.5 41 17462.0 42 20105.0 43 22748.0 44 28290.0 45 33832.0 46 38481.0 47 43130.0 48 47843.5 49 52557.0 50 50646.5 51 48736.0 52 45323.5 53 41911.0 54 37403.0 55 32895.0 56 31995.5 57 31096.0 58 31473.0 59 31850.0 60 30559.0 61 29268.0 62 26647.0 63 24026.0 64 21240.0 65 18454.0 66 14966.0 67 11478.0 68 10245.5 69 9013.0 70 8169.0 71 7325.0 72 6557.0 73 5789.0 74 4522.0 75 2953.5 76 2652.0 77 1914.0 78 1176.0 79 1143.0 80 1110.0 81 941.5 82 773.0 83 548.5 84 324.0 85 272.0 86 220.0 87 138.0 88 56.0 89 37.5 90 19.0 91 16.5 92 14.0 93 8.5 94 3.0 95 2.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 554770.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.185607703111753 #Duplication Level Percentage of deduplicated Percentage of total 1 76.6157709233558 21.594620631171825 2 9.387056834900433 5.291598028706349 3 3.3082281948612167 2.7973326627819537 4 1.6393150967275005 1.8482036887260012 5 0.9990647415002135 1.4079623436967887 6 0.6793192644513844 1.148821577579589 7 0.5021723827171791 0.9907823645022314 8 0.4445427330637345 1.0023765665122837 9 0.3494397106293224 0.8864253539718274 >10 4.67490890851267 31.917943407849524 >50 1.2790426601113558 24.41760352328199 >100 0.11598371728969474 4.9150490836581 >500 0.0019330619548282458 0.3837526775955941 >1k 0.0032217699247137424 1.397528089965971 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 2918 0.5259837410097878 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1470 0.26497467418930365 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGT 1128 0.20332750509220038 No Hit AATCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCT 1105 0.19918164284297998 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCC 1074 0.19359374155055248 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 949 0.17106188150044163 No Hit CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC 656 0.11824720154298178 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6076392018313895 0.0 2 0.0 0.0 0.0 0.8661247003262613 0.0 3 0.0 0.0 0.0 1.1658885664329361 0.0 4 0.0 0.0 0.0 2.436324963498387 0.0 5 0.0 0.0 0.0 2.6519098004578474 0.0 6 0.0 0.0 0.0 3.8323990122032554 0.0 7 0.0 0.0 0.0 4.6644555401337495 0.0 8 0.0 0.0 0.0 5.551309551706113 0.0 9 0.0 0.0 0.0 6.639147754925465 0.0 10 0.0 0.0 0.0 8.165365827279773 0.0 11 0.0 0.0 0.0 9.48573282621627 0.0 12 0.0 0.0 0.0 10.14618670800512 0.0 13 0.0 0.0 0.0 10.450817455882618 0.0 14 0.0 0.0 0.0 10.768967319790184 0.0 15 0.0 0.0 0.0 11.018980838906213 0.0 16 0.0 0.0 0.0 11.528200876038719 0.0 17 0.0 0.0 0.0 12.110784649494384 0.0 18 0.0 0.0 0.0 13.012960325900824 0.0 19 0.0 0.0 0.0 13.357247147466518 0.0 20 0.0 0.0 0.0 13.817798366890784 0.0 21 0.0 0.0 0.0 14.206247634154694 0.0 22 0.0 0.0 0.0 14.636876543432413 0.0 23 1.8025488040088685E-4 0.0 0.0 15.04893920002884 0.0 24 1.8025488040088685E-4 0.0 0.0 15.362582691926384 0.0 25 1.8025488040088685E-4 0.0 0.0 15.646303873677379 0.0 26 1.8025488040088685E-4 0.0 0.0 15.904969627052653 0.0 27 1.8025488040088685E-4 0.0 0.0 16.22528254952503 0.0 28 1.8025488040088685E-4 0.0 0.0 16.523243866827695 0.0 29 1.8025488040088685E-4 0.0 0.0 16.832561241595617 0.0 30 1.8025488040088685E-4 0.0 0.0 17.26030607278692 0.0 31 1.8025488040088685E-4 0.0 0.0 17.551958469275554 0.0 32 1.8025488040088685E-4 0.0 0.0 17.8663229806947 0.0 33 1.8025488040088685E-4 0.0 0.0 18.18104800187465 0.0 34 1.8025488040088685E-4 0.0 0.0 18.466030967788452 0.0 35 1.8025488040088685E-4 0.0 0.0 18.752816482506265 0.0 36 1.8025488040088685E-4 0.0 0.0 19.03094976296483 0.0 37 1.8025488040088685E-4 0.0 0.0 19.31539196423743 0.0 38 1.8025488040088685E-4 0.0 0.0 19.671936117670384 0.0 39 1.8025488040088685E-4 0.0 0.0 19.999639490239197 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTTA 25 3.8881866E-5 45.000004 38 CGGCATC 25 3.8881866E-5 45.000004 33 CATTACG 25 3.8881866E-5 45.000004 1 ACGATCA 25 3.8881866E-5 45.000004 36 CCACTAA 25 3.8881866E-5 45.000004 25 TCATGCG 25 3.8881866E-5 45.000004 1 TATTAGG 35 1.2104101E-7 45.000004 2 GGACGTC 35 1.2104101E-7 45.000004 9 CGTACAT 25 3.8881866E-5 45.000004 45 TCGACAG 25 3.8881866E-5 45.000004 1 TAGCTAG 25 3.8881866E-5 45.000004 1 GCATCGT 25 3.8881866E-5 45.000004 35 GTCATAC 20 7.030128E-4 45.0 9 AGCCGAT 20 7.030128E-4 45.0 18 ATCTCGA 20 7.030128E-4 45.0 26 AGTTTCG 20 7.030128E-4 45.0 41 CGTATAG 20 7.030128E-4 45.0 1 ACGTTCA 20 7.030128E-4 45.0 22 TTAGCCG 20 7.030128E-4 45.0 1 AGGACGA 20 7.030128E-4 45.0 31 >>END_MODULE