SRR3553034_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553034_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	340098
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	3737	1.098800933848479	Illumina Single End Adapter 2 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCC	2210	0.6498127010449929	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	2181	0.6412857470493799	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGT	2155	0.6336408917429681	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1799	0.5289651806244082	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	1100	0.3234361860404942	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	800	0.2352263171203594	No Hit
CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	721	0.21199771830472391	No Hit
CTCCCGGGGAATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTC	600	0.17641973784026957	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	579	0.17024504701586013	No Hit
CTCCCGGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGG	525	0.15436727061023586	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	518	0.15230904033543274	No Hit
AACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG	492	0.14466418502902104	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	482	0.14172385606501656	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	468	0.13760739551541026	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	379	0.11143846773577029	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCCATGGTC	370	0.10879217166816624	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTAT	356	0.10467571111855994	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAC	25	3.8849925E-5	45.000004	41
TGTCAAC	35	1.2085547E-7	45.000004	25
CGGGTAC	70	0.0	45.000004	6
CGCATAG	35	1.2085547E-7	45.000004	1
ATAGCGG	50	2.1827873E-11	45.000004	2
CACGCGA	25	3.8849925E-5	45.000004	40
GTTAGCG	25	3.8849925E-5	45.000004	39
ATATGTT	25	3.8849925E-5	45.000004	22
AGGCGTT	25	3.8849925E-5	45.000004	41
GCGTTAC	25	3.8849925E-5	45.000004	43
CGTTACG	25	3.8849925E-5	45.000004	44
GTTACGT	25	3.8849925E-5	45.000004	45
CGGATAG	35	1.2085547E-7	45.000004	29
TACGAAA	35	1.2085547E-7	45.000004	20
TGCGAGG	50	2.1827873E-11	45.000004	2
CGGGCTA	25	3.8849925E-5	45.000004	6
CGGGCCA	35	1.2085547E-7	45.000004	6
CATACGA	35	1.2085547E-7	45.000004	18
ATGACGG	25	3.8849925E-5	45.000004	2
GTTCACC	25	3.8849925E-5	45.000004	40