##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553034_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 340098 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.624978682615012 31.0 31.0 34.0 30.0 34.0 2 31.829213932454763 33.0 31.0 34.0 30.0 34.0 3 32.00620409411405 33.0 31.0 34.0 30.0 34.0 4 35.69603761268811 37.0 35.0 37.0 33.0 37.0 5 35.42775611735441 37.0 35.0 37.0 33.0 37.0 6 34.82171609359655 37.0 35.0 37.0 32.0 37.0 7 35.16852789490088 37.0 35.0 37.0 33.0 37.0 8 35.56392275167746 37.0 35.0 37.0 33.0 37.0 9 37.18271204182324 39.0 37.0 39.0 34.0 39.0 10 36.803553681585896 39.0 37.0 39.0 32.0 39.0 11 36.82245411616652 39.0 37.0 39.0 32.0 39.0 12 36.71597304306406 39.0 35.0 39.0 32.0 39.0 13 36.702768025686716 39.0 35.0 39.0 32.0 39.0 14 37.83139565654606 40.0 37.0 41.0 33.0 41.0 15 37.894136395979984 40.0 37.0 41.0 33.0 41.0 16 37.75846667725185 40.0 37.0 41.0 33.0 41.0 17 37.76921946027321 39.0 37.0 41.0 33.0 41.0 18 37.69914554040306 39.0 36.0 41.0 33.0 41.0 19 37.645325759045924 39.0 36.0 41.0 32.0 41.0 20 37.58695140812354 39.0 36.0 41.0 32.0 41.0 21 37.5389887620627 39.0 36.0 41.0 32.0 41.0 22 37.50319319725491 39.0 36.0 41.0 32.0 41.0 23 37.35911119736076 39.0 36.0 41.0 32.0 41.0 24 37.27170991890573 39.0 36.0 41.0 32.0 41.0 25 37.26086892601544 39.0 36.0 41.0 32.0 41.0 26 37.23421190362778 39.0 36.0 41.0 32.0 41.0 27 37.148815929526194 39.0 35.0 41.0 31.0 41.0 28 37.03043828543537 39.0 35.0 41.0 31.0 41.0 29 36.771260048574234 39.0 35.0 40.0 31.0 41.0 30 36.84578562649589 39.0 35.0 40.0 31.0 41.0 31 36.782195131991365 39.0 35.0 40.0 31.0 41.0 32 36.67515539638575 39.0 35.0 40.0 30.0 41.0 33 36.47091720621703 39.0 35.0 40.0 30.0 41.0 34 36.41053167028327 39.0 35.0 40.0 30.0 41.0 35 36.358570176831385 39.0 35.0 40.0 30.0 41.0 36 36.27732300689801 39.0 35.0 40.0 30.0 41.0 37 36.21628177760528 38.0 35.0 40.0 30.0 41.0 38 35.973572323271526 38.0 35.0 40.0 29.0 41.0 39 35.905456662491396 38.0 35.0 40.0 29.0 41.0 40 35.797990579186 38.0 35.0 40.0 29.0 41.0 41 35.79988709136778 38.0 35.0 40.0 29.0 41.0 42 35.67897194338102 38.0 35.0 40.0 29.0 41.0 43 35.61207063846303 38.0 35.0 40.0 28.0 41.0 44 35.57403748331363 38.0 35.0 40.0 28.0 41.0 45 35.39605937112244 38.0 34.0 40.0 27.0 41.0 46 35.189789413639595 38.0 34.0 40.0 26.0 41.0 47 35.114811025057485 38.0 34.0 40.0 26.0 41.0 48 35.017568465559926 37.0 34.0 40.0 26.0 41.0 49 34.89688266323236 37.0 34.0 40.0 26.0 41.0 50 34.77106304653365 37.0 34.0 40.0 26.0 41.0 51 33.45724173620545 36.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 6.0 12 3.0 13 4.0 14 8.0 15 8.0 16 33.0 17 83.0 18 183.0 19 367.0 20 611.0 21 998.0 22 1412.0 23 1746.0 24 2198.0 25 2527.0 26 2821.0 27 3463.0 28 4120.0 29 5183.0 30 7011.0 31 9075.0 32 11788.0 33 15834.0 34 23267.0 35 28819.0 36 34024.0 37 47611.0 38 66841.0 39 70040.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.53377555880952 33.99520138313075 20.280330963428188 27.190692094631547 2 22.2512334680004 33.245123464413204 20.60170891919388 23.901934148392524 3 20.016583455356983 31.051638057265844 21.357667495839436 27.574110991537733 4 21.250051455756868 31.765255896829736 18.706960934789386 28.27773171262401 5 17.220036577692312 36.450670100970896 17.811630765250015 28.517662556086776 6 20.906032966968343 37.68031567371757 20.32649412816306 21.08715723115102 7 78.010455809796 8.69866920711089 7.399631870813707 5.891243112279402 8 79.8463972149204 5.822439414521697 5.832142500102912 8.499020870454986 9 73.47823274467947 9.137366288540361 11.00094678592641 6.383454180853754 10 33.53739216343525 30.717028621162136 15.782803780086915 19.962775435315702 11 23.851948556004444 30.453575145987333 26.083364206787458 19.611112091220768 12 24.175090709148538 23.394139336308946 33.15309116783986 19.27767878670266 13 25.990743844421317 24.492646237261027 27.332415950696564 22.184193967621095 14 17.804573975736403 29.061329381531202 31.004592793841773 22.129503848890614 15 17.916894542161376 29.67115360866574 29.62763673999847 22.784315109174415 16 19.555245840904682 29.85139577415921 27.011626060723675 23.58173232421243 17 18.829866685484774 28.12130621173897 27.88490376303301 25.16392333974325 18 21.02246999394292 26.59174708466383 26.622914571682283 25.762868349710967 19 21.285335403324922 30.830525319172708 28.36241318678734 19.52172609071503 20 21.470576128057207 29.171885750577776 26.082188075201852 23.275350046163165 21 21.926327117477904 29.168357355820966 26.615269716375867 22.29004581032526 22 20.17683138389523 27.724361801598363 26.98222277108363 25.11658404342278 23 21.3997142000247 28.081023704932107 24.927226858140887 25.592035236902305 24 18.26620562308511 29.748190227522652 25.372098630394767 26.613505518997467 25 20.86927885491829 27.771995130815235 26.356520767543472 25.002205246723 26 22.969261801010298 27.184811436703537 24.59614581679398 25.249780945492184 27 18.313250886509184 27.590576833736158 26.13805432551794 27.958117954236723 28 21.258284376856082 26.016030673511754 28.368293844715346 24.357391104916818 29 21.305329640280153 30.273627013390257 23.06188216337644 25.359161182953148 30 21.656698951478692 25.768160941846176 26.1136495951167 26.461490511558434 31 22.208304665125933 26.71465283535922 22.259760421996013 28.817282077518836 32 23.026892248704787 27.109539015225025 23.25947226975754 26.604096466312647 33 21.832824656422563 23.57526360049162 27.465024786973167 27.12688695611265 34 21.441760904209964 25.64878358590759 26.207740121964846 26.701715387917602 35 22.475874600850343 23.876059253509283 26.93223717869555 26.71582896694482 36 22.83518280025169 24.9328134831725 26.908420514087116 25.32358320248869 37 23.07570170950726 26.83667648736541 22.70345606266429 27.384165740463047 38 23.503225540873512 26.96957935653841 27.0295620674041 22.497633035183977 39 23.99220224758746 23.63142388370411 27.066610212350557 25.309763656357877 40 26.26360637228093 24.297114361154726 25.5885068421455 23.850772424418846 41 23.68405577215979 22.223006309945955 29.053684526224792 25.039253391669458 42 26.379749366359107 23.60643108751007 25.328581761727502 24.68523778440332 43 21.20859281736441 23.300930908150004 27.31124558215573 28.17923069232986 44 24.016018912195896 21.802539268093316 25.76610271157137 28.41533910813942 45 25.05189680621468 23.18567001276103 26.91871166546113 24.84372151556316 46 20.3532511217355 23.84930225993684 31.60412586960229 24.193320748725366 47 21.519973654652482 24.051596892660353 27.45885009614876 26.96957935653841 48 22.941916741645056 22.387076666137407 30.485624731694983 24.185381860522558 49 23.92751501037936 22.194779151891513 28.273909284970806 25.603796552758322 50 21.402948561885104 21.74579091908803 27.981640585948757 28.869619933078113 51 21.74579091908803 20.72108627513246 31.465930408294078 26.067192397485428 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2149.0 1 1763.0 2 1377.0 3 949.0 4 521.0 5 486.5 6 452.0 7 502.5 8 553.0 9 580.5 10 608.0 11 720.5 12 833.0 13 831.0 14 829.0 15 876.0 16 923.0 17 911.5 18 900.0 19 1078.0 20 1256.0 21 1217.0 22 1178.0 23 1478.0 24 1778.0 25 1765.0 26 2112.0 27 2472.0 28 3103.0 29 3734.0 30 4518.5 31 5303.0 32 5607.0 33 5911.0 34 6681.5 35 7452.0 36 7649.0 37 7846.0 38 8796.0 39 9746.0 40 10052.5 41 10359.0 42 12303.5 43 14248.0 44 15283.5 45 16319.0 46 23377.0 47 30435.0 48 31934.0 49 33433.0 50 35000.0 51 36567.0 52 33967.0 53 31367.0 54 28310.0 55 25253.0 56 22043.5 57 18834.0 58 16791.5 59 14749.0 60 13498.5 61 12248.0 62 11192.0 63 10136.0 64 8783.5 65 7431.0 66 6477.5 67 5524.0 68 5185.5 69 4847.0 70 4111.0 71 3375.0 72 3234.5 73 3094.0 74 2516.5 75 1535.0 76 1131.0 77 856.0 78 581.0 79 435.0 80 289.0 81 251.0 82 213.0 83 141.0 84 69.0 85 60.0 86 51.0 87 34.0 88 17.0 89 11.0 90 5.0 91 7.5 92 10.0 93 5.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 340098.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.272904762670137 #Duplication Level Percentage of deduplicated Percentage of total 1 75.6713033938951 22.90790160910504 2 10.482759595957592 6.346871657967815 3 3.726661178366623 3.3845057680629855 4 1.9151209440360493 2.31905095791193 5 1.1807368234834148 1.787216670354554 6 0.6792673093902962 1.233803673934058 7 0.535421997249387 1.1346145391398528 8 0.4295362662070106 1.0402648383198208 9 0.32664734378341287 0.8899707536400988 >10 3.973709884797881 29.50481359423147 >50 0.9759463442482211 19.732372259809143 >100 0.09090186010909737 4.600450241961572 >500 0.005993529237962464 1.1318928058674924 >1k 0.005993529237962464 3.9862706296941717 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT 3737 1.098800933848479 Illumina Single End Adapter 2 (95% over 21bp) AATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCC 2210 0.6498127010449929 No Hit AATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT 2181 0.6412857470493799 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGT 2155 0.6336408917429681 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1799 0.5289651806244082 No Hit AAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT 1100 0.3234361860404942 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT 800 0.2352263171203594 No Hit CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC 721 0.21199771830472391 No Hit CTCCCGGGGAATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTC 600 0.17641973784026957 No Hit AATGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT 579 0.17024504701586013 No Hit CTCCCGGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGG 525 0.15436727061023586 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 518 0.15230904033543274 No Hit AACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG 492 0.14466418502902104 No Hit AATGATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT 482 0.14172385606501656 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT 468 0.13760739551541026 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 379 0.11143846773577029 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCCATGGTC 370 0.10879217166816624 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTAT 356 0.10467571111855994 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2222947503366677 0.0 2 0.0 0.0 0.0 1.7024504701586014 0.0 3 0.0 0.0 0.0 2.2640533022834597 0.0 4 0.0 0.0 0.0 4.842133737922599 0.0 5 0.0 0.0 0.0 5.201147904427548 0.0 6 0.0 0.0 0.0 7.040323671412358 0.0 7 0.0 0.0 0.0 8.484319225634964 0.0 8 0.0 0.0 0.0 9.66015677834036 0.0 9 0.0 0.0 0.0 11.653405783039007 0.0 10 0.0 0.0 0.0 14.020076566166223 0.0 11 0.0 0.0 0.0 16.245611559021224 0.0 12 0.0 0.0 0.0 17.255908591053167 0.0 13 0.0 0.0 0.0 17.731065751636294 0.0 14 0.0 0.0 0.0 18.264147392810308 0.0 15 0.0 0.0 0.0 18.6510946844733 0.0 16 0.0 0.0 0.0 19.418520544078472 0.0 17 0.0 0.0 0.0 20.30708795700063 0.0 18 0.0 0.0 0.0 22.018065381154845 0.0 19 0.0 0.0 0.0 22.51880340372481 0.0 20 0.0 0.0 0.0 23.28564119753718 0.0 21 0.0 0.0 0.0 23.84195143752683 0.0 22 0.0 0.0 0.0 24.39120488800287 0.0 23 0.0 0.0 0.0 24.9354597792401 0.0 24 0.0 0.0 0.0 25.31917270904269 0.0 25 0.0 0.0 0.0 25.657310539903204 0.0 26 0.0 0.0 0.0 25.96192862057407 0.0 27 0.0 0.0 0.0 26.43355738640039 0.0 28 0.0 0.0 0.0 26.808743362207363 0.0 29 0.0 0.0 0.0 27.171285923469117 0.0 30 0.0 0.0 0.0 27.769348834747632 0.0 31 0.0 0.0 0.0 28.103370205058543 0.0 32 0.0 0.0 0.0 28.462972437356292 0.0 33 0.0 0.0 0.0 28.7972878405636 0.0 34 0.0 0.0 0.0 29.113373204194087 0.0 35 0.0 0.0 0.0 29.432692929684972 0.0 36 0.0 0.0 0.0 29.74524989855865 0.0 37 0.0 0.0 0.0 30.051044110815116 0.0 38 2.9403289640044926E-4 0.0 0.0 30.37271609947721 0.0 39 2.9403289640044926E-4 0.0 0.0 30.689095496004093 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAC 25 3.8849925E-5 45.000004 41 TGTCAAC 35 1.2085547E-7 45.000004 25 CGGGTAC 70 0.0 45.000004 6 CGCATAG 35 1.2085547E-7 45.000004 1 ATAGCGG 50 2.1827873E-11 45.000004 2 CACGCGA 25 3.8849925E-5 45.000004 40 GTTAGCG 25 3.8849925E-5 45.000004 39 ATATGTT 25 3.8849925E-5 45.000004 22 AGGCGTT 25 3.8849925E-5 45.000004 41 GCGTTAC 25 3.8849925E-5 45.000004 43 CGTTACG 25 3.8849925E-5 45.000004 44 GTTACGT 25 3.8849925E-5 45.000004 45 CGGATAG 35 1.2085547E-7 45.000004 29 TACGAAA 35 1.2085547E-7 45.000004 20 TGCGAGG 50 2.1827873E-11 45.000004 2 CGGGCTA 25 3.8849925E-5 45.000004 6 CGGGCCA 35 1.2085547E-7 45.000004 6 CATACGA 35 1.2085547E-7 45.000004 18 ATGACGG 25 3.8849925E-5 45.000004 2 GTTCACC 25 3.8849925E-5 45.000004 40 >>END_MODULE