SRR3553033_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553033_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	347810
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGCT	3967	1.1405652511428654	Illumina Single End Adapter 2 (95% over 21bp)
AATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGT	2626	0.7550099192087634	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCC	2455	0.7058451453379718	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	2395	0.6885943474885714	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1949	0.5603634168080274	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCT	1087	0.3125269543716397	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	925	0.26594980017825826	No Hit
CCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTGC	795	0.2285730715045571	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTT	668	0.19205888272332594	No Hit
CTCCCGGGGAATGATACCTGTCTCTTATACACATCTGACGCTCCCATGGTC	613	0.1762456513613755	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	534	0.15353210085966476	No Hit
CTCCCGGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTCCCATGG	518	0.14893188809982463	No Hit
AACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCTTCTG	504	0.1449067019349645	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	467	0.13426870992783416	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTATGCCGTCT	450	0.129380983870504	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	399	0.11471780569851356	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCCATGGTCGTAT	383	0.1101175929386734	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCCATGGTC	371	0.10666743336879331	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTT	20	7.0264953E-4	45.0	30
ACAACGT	20	7.0264953E-4	45.0	28
TTAGGTC	35	1.2086639E-7	45.0	25
AGACTAC	20	7.0264953E-4	45.0	26
TCGTTGT	20	7.0264953E-4	45.0	32
TCGCACG	20	7.0264953E-4	45.0	37
ATTAGGT	35	1.2086639E-7	45.0	24
GAAGATC	20	7.0264953E-4	45.0	20
TACTTCG	20	7.0264953E-4	45.0	28
CAACGTG	20	7.0264953E-4	45.0	29
GTACAAC	20	7.0264953E-4	45.0	12
CGAAAGT	20	7.0264953E-4	45.0	16
ACTTGCA	20	7.0264953E-4	45.0	10
GCGAAGC	20	7.0264953E-4	45.0	30
GCGAACG	20	7.0264953E-4	45.0	40
GGCACGC	20	7.0264953E-4	45.0	8
CGTGATT	20	7.0264953E-4	45.0	5
CGTTGTG	20	7.0264953E-4	45.0	33
CTATAAC	20	7.0264953E-4	45.0	28
CGCATAG	20	7.0264953E-4	45.0	1