##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553032_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 417401 Sequences flagged as poor quality 0 Sequence length 51 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.717453959142407 31.0 31.0 34.0 30.0 34.0 2 31.92754928713635 33.0 31.0 34.0 30.0 34.0 3 32.10721823857633 34.0 31.0 34.0 30.0 34.0 4 35.78615527993464 37.0 35.0 37.0 35.0 37.0 5 35.55068627051684 37.0 35.0 37.0 33.0 37.0 6 34.95287505300658 37.0 35.0 37.0 33.0 37.0 7 35.349678127268504 37.0 35.0 37.0 33.0 37.0 8 35.702442016190666 37.0 35.0 37.0 35.0 37.0 9 37.217785774351285 39.0 37.0 39.0 34.0 39.0 10 36.88846217426408 39.0 37.0 39.0 33.0 39.0 11 36.9187256379357 39.0 37.0 39.0 33.0 39.0 12 36.83055862348198 39.0 37.0 39.0 33.0 39.0 13 36.790141853996516 39.0 37.0 39.0 33.0 39.0 14 37.941126159256925 40.0 37.0 41.0 33.0 41.0 15 37.97151420336798 40.0 37.0 41.0 33.0 41.0 16 37.85486139228224 40.0 37.0 41.0 33.0 41.0 17 37.83282263339091 40.0 37.0 41.0 33.0 41.0 18 37.794133219613755 40.0 37.0 41.0 33.0 41.0 19 37.75692439644371 40.0 36.0 41.0 33.0 41.0 20 37.626035874375 39.0 36.0 41.0 32.0 41.0 21 37.5463475171358 39.0 36.0 41.0 32.0 41.0 22 37.525396441311834 39.0 36.0 41.0 32.0 41.0 23 37.38061959602397 39.0 36.0 41.0 32.0 41.0 24 37.28340372926754 39.0 36.0 41.0 32.0 41.0 25 37.21246235634318 39.0 36.0 41.0 31.0 41.0 26 37.221602248197776 39.0 36.0 41.0 32.0 41.0 27 37.145967546795525 39.0 35.0 41.0 31.0 41.0 28 36.92027570609558 39.0 35.0 41.0 31.0 41.0 29 36.65827106307843 39.0 35.0 41.0 30.0 41.0 30 36.763711634615156 39.0 35.0 41.0 31.0 41.0 31 36.66407124084513 39.0 35.0 41.0 30.0 41.0 32 36.63392277450222 39.0 35.0 41.0 30.0 41.0 33 36.35404323420404 39.0 35.0 40.0 30.0 41.0 34 36.396894113813815 39.0 35.0 40.0 30.0 41.0 35 36.19653283053946 39.0 35.0 40.0 30.0 41.0 36 36.19184429361693 39.0 35.0 40.0 30.0 41.0 37 36.12184685709905 38.0 35.0 40.0 30.0 41.0 38 35.943572248269646 38.0 35.0 40.0 29.0 41.0 39 35.888795187361794 38.0 35.0 40.0 29.0 41.0 40 35.79466029070366 38.0 35.0 40.0 29.0 41.0 41 35.7598520367704 38.0 35.0 40.0 29.0 41.0 42 35.71256178111696 38.0 35.0 40.0 29.0 41.0 43 35.67619387591309 38.0 35.0 40.0 28.0 41.0 44 35.62875268626573 38.0 35.0 40.0 28.0 41.0 45 35.39221036844665 38.0 34.0 40.0 27.0 41.0 46 35.240758886538366 38.0 34.0 40.0 27.0 41.0 47 35.026468551824266 37.0 34.0 40.0 26.0 41.0 48 34.98712029918472 37.0 34.0 40.0 26.0 41.0 49 34.83322751981907 37.0 34.0 40.0 26.0 41.0 50 34.795029240466604 37.0 34.0 40.0 26.0 41.0 51 33.499632248125906 36.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 2.0 11 1.0 12 5.0 13 12.0 14 13.0 15 26.0 16 62.0 17 102.0 18 229.0 19 444.0 20 898.0 21 1370.0 22 1887.0 23 2209.0 24 2658.0 25 2999.0 26 3431.0 27 4222.0 28 5101.0 29 6505.0 30 8303.0 31 10650.0 32 13814.0 33 18886.0 34 28442.0 35 34916.0 36 41497.0 37 58718.0 38 81662.0 39 88312.0 40 22.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.368187905635107 34.7792650233229 20.134355212373713 26.718191858668284 2 26.353075340020748 30.59096648067446 18.687305492799492 24.368652686505303 3 20.399567801706272 30.215548117996843 19.221563915754874 30.16332016454201 4 19.604409189244876 31.249565765295245 18.456831679847436 30.689193365612443 5 18.765168267445453 31.949851581572634 17.666943778285148 31.61803637269676 6 20.066075548453405 39.6000488738647 18.102735738534406 22.231139839147488 7 84.35844667358248 5.8341978097800435 5.35025071813436 4.457104798503118 8 86.22092424311394 4.444886332327905 4.403918533975721 4.930270890582437 9 78.16727798927171 8.430262505360552 8.511239790992354 4.891219714375385 10 35.00494728091212 35.303461180016335 12.258236084724281 17.433355454347257 11 26.367689583877375 31.419186825139374 22.71364946418432 19.49947412679893 12 26.310909652827856 23.384227637212177 31.291971030256278 19.01289167970369 13 28.614689471275824 23.816665508707455 25.547614883529267 22.021030136487454 14 21.773067146461077 28.236396175380506 28.069650048754074 21.920886629404336 15 20.14417790086751 27.01622660223622 30.42757444280201 22.412021054094264 16 22.368178322524383 28.35187265962468 25.67267447849909 23.607274539351845 17 22.030852824981253 25.31115162637368 26.404584560171156 26.253410988473913 18 26.27161889885266 24.818579735074902 24.94747257433499 23.96232879173744 19 25.7340063871433 28.47932803227592 24.926629308506687 20.860036272074097 20 25.429503043835545 26.46759351319235 24.177230049760304 23.925673393211806 21 26.369127050486224 26.791742233487703 25.43573206580722 21.403398650218854 22 23.088109515789373 26.522217244328594 23.906267593992347 26.483405645889686 23 22.90579083423375 27.7881461711879 23.878955728424227 25.42710726615413 24 20.89573335952717 26.845647231319525 25.472627042101003 26.78599236705231 25 23.41489359153428 27.47286182831378 24.110867007985128 25.00137757216681 26 23.090265715702646 27.527964714986307 23.069662027642483 26.31210754166856 27 21.803014367478752 25.596728325998257 23.976463880057786 28.6237934264652 28 23.453944767741334 25.741912453491967 25.469512531115164 25.33463024765154 29 23.282167507983928 30.195184007704825 22.200473884825385 24.322174599485866 30 23.927590015356934 24.729217227558152 24.499941303446807 26.843251453638107 31 25.614217503072584 28.34732068202999 21.50474004614268 24.533721768754745 32 25.440044465633765 25.54929192790626 22.74719035172412 26.263473254735853 33 24.438609394802597 25.731610609461885 23.827206930505675 26.00257306522984 34 24.52916979116006 25.006887860834066 24.013358856351566 26.450583491654307 35 23.933100304024187 24.204781493096565 26.33510700741014 25.527011195469107 36 25.081875702262334 27.22298221614227 24.127877029523166 23.56726505207223 37 25.90075251376973 25.860982604258254 23.368894660051126 24.869370221920885 38 26.443156580841926 25.598644948143388 25.98388599931481 21.974312471699875 39 25.6738723673398 23.460413367481152 25.337026025332953 25.528688239846097 40 26.829116365317763 23.58643127352354 25.912731402176803 23.67172095898189 41 22.786001950163033 23.382550592835187 28.319529660925586 25.511917796076194 42 24.3813503082168 24.419443173351286 24.357152953634515 26.842053564797403 43 22.268034815441265 24.277133979075277 27.39691567581295 26.05791552967051 44 25.358348446697544 21.138186060886294 24.966399218018164 28.537066274397997 45 26.431656847971137 22.264920304455426 26.81977283236025 24.483650015213186 46 23.78935364313933 23.410581191707735 28.15062733438588 24.649437830767056 47 23.385904681589167 25.36433789090108 26.14200732628815 25.107750101221608 48 23.80899902012693 23.23353322105122 29.340849686512488 23.61661807230936 49 24.244551402608046 22.850448369793078 27.88996672264801 25.015033504950875 50 23.303489929348515 22.46041576325883 26.771138545427537 27.464955761965115 51 23.47263183365636 21.269714255595936 28.619241448870508 26.638412461877188 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1518.0 1 1266.0 2 1014.0 3 684.5 4 355.0 5 342.0 6 329.0 7 389.0 8 449.0 9 487.0 10 525.0 11 583.5 12 642.0 13 657.5 14 673.0 15 677.0 16 681.0 17 693.5 18 706.0 19 774.0 20 842.0 21 944.0 22 1046.0 23 1372.0 24 1698.0 25 1832.0 26 2134.5 27 2303.0 28 3017.5 29 3732.0 30 4122.5 31 4513.0 32 5385.5 33 6258.0 34 7281.0 35 8304.0 36 8834.0 37 9364.0 38 10341.5 39 11319.0 40 12304.0 41 13289.0 42 13691.0 43 14093.0 44 16630.5 45 19168.0 46 23356.5 47 27545.0 48 30315.0 49 33085.0 50 39017.5 51 44950.0 52 42501.0 53 40052.0 54 36559.5 55 33067.0 56 30134.0 57 27201.0 58 24705.5 59 22210.0 60 20870.0 61 19530.0 62 18388.5 63 17247.0 64 15042.5 65 12838.0 66 11541.0 67 10244.0 68 8853.0 69 7462.0 70 6508.5 71 5555.0 72 4782.5 73 4010.0 74 3494.5 75 2639.0 76 2299.0 77 1730.0 78 1161.0 79 934.5 80 708.0 81 487.0 82 266.0 83 198.0 84 130.0 85 82.5 86 35.0 87 24.5 88 14.0 89 11.5 90 9.0 91 8.5 92 8.0 93 7.0 94 6.0 95 4.0 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 417401.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.596528667547155 #Duplication Level Percentage of deduplicated Percentage of total 1 77.46310061634803 22.926388780688345 2 9.245342001405216 5.472600591717345 3 3.1915328960035563 2.8337488454996715 4 1.5636394844238861 1.8511320330584078 5 0.9399327134253187 1.3909372749228914 6 0.6175996577625621 1.0967283585622187 7 0.4672316255209275 0.9679903939380351 8 0.3741023348591159 0.885770438260332 9 0.3324426718927663 0.8855234162091209 >10 4.663991014398706 34.3854687797915 >50 1.047151717563799 20.264743150158758 >100 0.08168110121402487 3.697047658189319 >500 0.008984921133542736 1.5795795068730145 >1k 0.003267244048560995 1.7623407721310491 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT 2827 0.6772863505358157 Illumina Single End Adapter 1 (95% over 21bp) AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTC 1975 0.47316609207931937 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1271 0.3045033433077544 No Hit AGCCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGT 1217 0.29156614382811735 No Hit AGCCCAGGGAATGATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGT 691 0.16554823778572644 No Hit AATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT 643 0.1540485049149379 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC 634 0.15189230500166506 No Hit AGCCCAGGGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCC 625 0.14973610508839222 No Hit AGCCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT 617 0.1478194829432608 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGT 609 0.1459028607981294 No Hit AAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT 582 0.13943426105831083 No Hit AGCCCAGGGAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCC 559 0.133923972391058 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 536 0.12841368372380516 No Hit AGCCCAGGGAATGATACGGCGACCACCGACTGTCTCTTATACACATCTGAC 529 0.12673663934681517 Illumina DpnII expression PCR Primer 2 (95% over 23bp) AGCCCCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT 509 0.12194508398398662 No Hit AAAAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTT 476 0.11403901763531951 No Hit CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC 443 0.1061329512866524 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7503575698189511 0.0 2 0.0 0.0 0.0 1.0057474706577127 0.0 3 0.0 0.0 0.0 1.3155215248645786 0.0 4 0.0 0.0 0.0 2.721603446086617 0.0 5 0.0 0.0 0.0 2.9707643249537017 0.0 6 0.0 0.0 0.0 4.279338094542179 0.0 7 0.0 0.0 0.0 5.148286659591137 0.0 8 0.0 0.0 0.0 5.92260200622423 0.0 9 0.0 0.0 0.0 6.959255008972187 0.0 10 0.0 0.0 0.0 8.619289364424139 0.0 11 0.0 0.0 0.0 10.075922194724019 0.0 12 0.0 0.0 0.0 10.825561031238545 0.0 13 2.3957776814142754E-4 0.0 0.0 11.184208950146262 0.0 14 2.3957776814142754E-4 0.0 0.0 11.546690113344242 0.0 15 2.3957776814142754E-4 0.0 0.0 11.859818256305088 0.0 16 2.3957776814142754E-4 0.0 0.0 12.587176360382461 0.0 17 2.3957776814142754E-4 0.0 0.0 13.270931310658096 0.0 18 2.3957776814142754E-4 0.0 0.0 14.695700297795165 0.0 19 2.3957776814142754E-4 0.0 0.0 15.073035282617914 0.0 20 2.3957776814142754E-4 0.0 0.0 15.906765915750082 0.0 21 2.3957776814142754E-4 0.0 0.0 16.34734943136217 0.0 22 2.3957776814142754E-4 0.0 0.0 16.848306544545892 0.0 23 2.3957776814142754E-4 0.0 0.0 17.338243080395113 0.0 24 2.3957776814142754E-4 0.0 0.0 17.653767001037373 0.0 25 2.3957776814142754E-4 0.0 0.0 17.94509356709735 0.0 26 2.3957776814142754E-4 0.0 0.0 18.21869137831486 0.0 27 2.3957776814142754E-4 0.0 0.0 18.720127647034865 0.0 28 2.3957776814142754E-4 0.0 0.0 19.058890611186843 0.0 29 2.3957776814142754E-4 0.0 0.0 19.36387311003088 0.0 30 2.3957776814142754E-4 0.0 0.0 20.060804837554294 0.0 31 2.3957776814142754E-4 0.0 0.0 20.345183648338168 0.0 32 2.3957776814142754E-4 0.0 0.0 20.621656392773374 0.0 33 2.3957776814142754E-4 0.0 0.0 20.921368180718304 0.0 34 2.3957776814142754E-4 0.0 0.0 21.16118552662787 0.0 35 2.3957776814142754E-4 0.0 0.0 21.47000126976217 0.0 36 2.3957776814142754E-4 0.0 0.0 21.73856794784871 0.0 37 2.3957776814142754E-4 0.0 0.0 22.015040692283918 0.0 38 2.3957776814142754E-4 0.0 0.0 22.282888637066034 0.0 39 2.3957776814142754E-4 0.0 0.0 22.558403070428678 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAG 30 2.1621672E-6 45.000004 1 TACCACG 25 3.886522E-5 45.000004 1 CCGATCA 25 3.886522E-5 45.000004 22 TAGCGTG 25 3.886522E-5 45.000004 1 ACTCGCA 30 2.1621672E-6 45.000004 12 TTACGCG 30 2.1621672E-6 45.000004 1 TCGAGTG 25 3.886522E-5 45.000004 39 ATACGAG 25 3.886522E-5 45.000004 1 GATTAGC 25 3.886522E-5 45.000004 9 TACGTTC 25 3.886522E-5 45.000004 21 TATCCGG 50 2.1827873E-11 45.000004 2 CTTCGGC 20 7.028119E-4 45.0 35 CGGAACA 20 7.028119E-4 45.0 41 CGGAAAT 20 7.028119E-4 45.0 16 CGAACAG 35 1.209446E-7 45.0 1 CGTGCGT 20 7.028119E-4 45.0 14 CGTGACA 20 7.028119E-4 45.0 18 CGTTGAT 45 3.8380676E-10 45.0 25 ATTACGG 55 1.8189894E-12 45.0 2 GTCTACG 20 7.028119E-4 45.0 25 >>END_MODULE