SRR3553026_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553026_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504716
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGT	3952	0.783014606234001	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCC	3705	0.7340761933443758	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3617	0.7166406454322827	No Hit
AATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	3456	0.6847415180022032	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	2760	0.5468421845156484	No Hit
AATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT	918	0.18188446571933523	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	881	0.17455361034720518	No Hit
AAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	881	0.17455361034720518	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	717	0.1420600892383043	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	650	0.1287852970779607	No Hit
AACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG	636	0.12601145991012766	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT	587	0.11630302982271218	No Hit
CGCAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	583	0.11551050491761704	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	558	0.1105572242607724	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAACG	35	1.2101191E-7	45.000004	1
GACGTGT	25	3.8876846E-5	45.000004	40
CGGTTCG	25	3.8876846E-5	45.000004	29
CGCATAG	35	1.2101191E-7	45.000004	1
CGGGCTC	35	1.2101191E-7	45.000004	6
GTATCGG	25	3.8876846E-5	45.000004	2
GCGATAG	35	1.2101191E-7	45.000004	1
CGTAACG	25	3.8876846E-5	45.000004	1
TTTGCGG	35	1.2101191E-7	45.000004	2
AACTCGT	25	3.8876846E-5	45.000004	41
TAAGCGA	25	3.8876846E-5	45.000004	13
TAGTACG	25	3.8876846E-5	45.000004	1
TACCCTA	20	7.029522E-4	45.0	26
ACCGGCC	20	7.029522E-4	45.0	18
GATCGCC	20	7.029522E-4	45.0	33
ACCGCGT	20	7.029522E-4	45.0	42
CGGCATT	20	7.029522E-4	45.0	33
TTATGCC	20	7.029522E-4	45.0	43
TAGCGCA	20	7.029522E-4	45.0	25
TCTTACG	20	7.029522E-4	45.0	1