##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553026_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 504716 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.53869502849127 31.0 31.0 34.0 30.0 34.0 2 31.72837001402769 31.0 31.0 34.0 30.0 34.0 3 31.925807781009517 33.0 31.0 34.0 30.0 34.0 4 35.71772244192774 37.0 35.0 37.0 35.0 37.0 5 35.23386221162 37.0 35.0 37.0 33.0 37.0 6 35.269333645059795 37.0 35.0 37.0 32.0 37.0 7 35.35801321931542 37.0 35.0 37.0 33.0 37.0 8 35.696062736271486 37.0 35.0 37.0 35.0 37.0 9 37.336777514483394 39.0 37.0 39.0 34.0 39.0 10 36.55486649917974 38.0 35.0 39.0 32.0 39.0 11 36.55544702367272 38.0 35.0 39.0 32.0 39.0 12 36.1611757899492 38.0 35.0 39.0 32.0 39.0 13 35.970525998779515 38.0 35.0 39.0 31.0 39.0 14 36.8878597072413 39.0 35.0 40.0 31.0 41.0 15 36.942751963480454 39.0 35.0 40.0 31.0 41.0 16 36.93957195729876 38.0 35.0 40.0 32.0 41.0 17 36.85139563635787 38.0 35.0 40.0 32.0 41.0 18 36.74481688712068 38.0 35.0 40.0 31.0 41.0 19 36.85688387132566 39.0 35.0 40.0 31.0 41.0 20 36.773474587688916 39.0 35.0 40.0 31.0 41.0 21 36.84229546913512 39.0 35.0 40.0 31.0 41.0 22 36.89955341221598 39.0 35.0 40.0 31.0 41.0 23 36.738924464451294 38.0 35.0 40.0 31.0 41.0 24 36.36106245888777 38.0 35.0 40.0 30.0 41.0 25 36.53086290111667 38.0 35.0 40.0 31.0 41.0 26 36.43781057069718 38.0 35.0 40.0 31.0 41.0 27 36.367735518588674 38.0 35.0 40.0 30.0 41.0 28 36.2165812060644 38.0 35.0 40.0 30.0 41.0 29 35.95633385904152 38.0 34.0 40.0 30.0 41.0 30 36.03458776817062 38.0 35.0 40.0 30.0 41.0 31 35.798082485992126 38.0 34.0 40.0 29.0 41.0 32 35.81824828220227 38.0 34.0 40.0 30.0 41.0 33 35.786515585002256 38.0 34.0 40.0 29.0 41.0 34 35.57256358031051 38.0 34.0 40.0 29.0 41.0 35 35.571862195769505 38.0 34.0 40.0 29.0 41.0 36 35.264404140150106 38.0 34.0 40.0 27.0 41.0 37 35.29764659729432 38.0 34.0 40.0 27.0 41.0 38 35.182072690384295 38.0 34.0 40.0 27.0 41.0 39 35.06848802098606 38.0 34.0 40.0 26.0 41.0 40 34.96858233144977 37.0 34.0 40.0 26.0 41.0 41 34.87870208196293 37.0 34.0 40.0 26.0 41.0 42 34.87096902020146 37.0 33.0 40.0 26.0 41.0 43 34.7640534478796 37.0 33.0 40.0 26.0 41.0 44 34.65714580080679 37.0 33.0 40.0 26.0 41.0 45 34.396759761925516 37.0 33.0 40.0 24.0 41.0 46 34.27079189088517 36.0 33.0 40.0 24.0 41.0 47 34.17832999151998 36.0 33.0 40.0 24.0 41.0 48 34.15858819613406 36.0 33.0 40.0 23.0 41.0 49 34.00148400288479 36.0 33.0 40.0 24.0 41.0 50 33.87232423778917 36.0 33.0 39.0 23.0 41.0 51 32.22130861712329 35.0 30.0 38.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 5.0 11 6.0 12 12.0 13 11.0 14 31.0 15 49.0 16 90.0 17 221.0 18 404.0 19 739.0 20 1228.0 21 1817.0 22 2549.0 23 3112.0 24 3725.0 25 4437.0 26 5183.0 27 6203.0 28 7740.0 29 9767.0 30 12879.0 31 16672.0 32 22004.0 33 30379.0 34 45884.0 35 51035.0 36 53446.0 37 71140.0 38 90012.0 39 63929.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.532901671435027 33.6510037327923 18.718645733442173 26.097448862330495 2 24.383217492609706 33.68369538512748 18.623542744830758 23.30954437743206 3 20.76118054509863 31.266098162134746 22.54277653175251 25.429944761014116 4 22.283422756560125 33.46693982358396 18.362009526149357 25.88762789370656 5 18.253433614151323 36.59959264219878 18.002797612914986 27.14417613073491 6 20.338170377004097 36.58948794965882 20.691438353450256 22.380903319886826 7 81.27501406731706 9.056578352974743 5.40957687095317 4.258830708755022 8 83.14378779353142 6.033293971263047 4.1978062910626965 6.625111944142844 9 78.71218665546564 8.76433479422091 7.666885931890411 4.856592618423035 10 37.247085489661515 35.85759119980345 12.351500645907798 14.543822664627237 11 32.073086646747875 28.363277565997514 23.525507414070486 16.038128373184126 12 29.55503689203433 27.48951885813012 27.257507192163516 15.697937057672037 13 25.10778338709294 33.80732927032232 23.51005317842113 17.574834164163608 14 18.518731326131924 33.65873085061698 29.9921143771943 17.83042344605679 15 18.620174513984104 31.290072040513873 29.478161976240102 20.61159146926192 16 21.726674010730786 30.229079323817754 28.610941598839744 19.43330506661172 17 21.410258442371553 29.398116960825494 25.95598316677102 23.23564143003194 18 24.500313047337514 28.581221914898673 24.436316661251077 22.482148376512733 19 22.575468184087686 32.10023062474738 24.856751123404052 20.46755006776088 20 26.32411098518771 31.756869209614912 23.259417177184794 18.659602628012586 21 21.882603285808255 31.662360614682317 25.017633679138367 21.43740242037106 22 22.64481411328351 28.719121248385232 27.157450922895254 21.47861371543601 23 21.987810966959636 31.3102814255938 23.258426521053423 23.443481086393138 24 19.201689663097664 33.0478922800149 26.887596192710355 20.862821864177082 25 21.316740503570326 31.09828101348085 24.878545558294167 22.706432924654656 26 23.66261422265195 32.722957068925886 21.543204495201262 22.0712242132209 27 19.57160066255082 30.027777997923582 26.68371916087463 23.716902178650965 28 21.707059019329684 32.412881699807414 25.067760879385638 20.812298401477268 29 19.97400518311288 34.30305359845933 25.312254812607488 20.410686405820304 30 24.071358942454765 27.841598047218636 25.636199367565126 22.450843642761473 31 25.97084300874155 32.36750964899072 21.834259266597453 19.827388075670278 32 24.825050127200246 28.0958004105279 25.51335800727538 21.56579145499647 33 26.178088271423928 28.043295635565347 22.17068608881034 23.60793000420038 34 20.04315298108243 32.77625436879354 26.223658453466903 20.95693419665713 35 24.58015993152585 28.904770207403768 25.81233802772252 20.702731833347862 36 23.28854246744704 32.91554062086401 24.257206032699578 19.53871087898937 37 20.667266343844855 31.334057172746654 23.689758200651458 24.308918282757038 38 24.807614579288153 32.155905499330316 23.64755624945514 19.38892367192639 39 22.207538496897264 28.159400534161787 26.152331212008338 23.48072975693261 40 28.207150159693768 28.27510917030568 21.9941511662004 21.523589503800157 41 21.4023331933206 27.33953351984086 27.188359394193963 24.069773892644577 42 27.392038294803417 26.83707273001054 23.079910286180745 22.690978689005302 43 23.6576609419951 26.64805554014535 25.80976232178096 23.884521196078587 44 23.722647984212905 26.79031376060993 24.484264418009335 25.002773837167837 45 25.867022246174088 28.73497174648713 23.683616132636967 21.714389874701812 46 22.14552342307357 26.923656075892183 28.025265693974433 22.90555480705981 47 22.87444820453483 29.935250715253726 24.307729495399393 22.88257158481205 48 22.682657177501802 28.170892145285663 28.42529263982121 20.721158037391323 49 24.393322185149668 25.601922665419764 27.07463207031281 22.930123079117763 50 22.153646803350796 27.655156563295 25.13928625207047 25.051910381283733 51 21.214306659586775 26.92642991306002 28.050230228484928 23.809033198868274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 4251.0 1 3389.5 2 2528.0 3 1720.0 4 912.0 5 832.0 6 752.0 7 778.5 8 805.0 9 986.0 10 1167.0 11 1219.5 12 1272.0 13 1493.0 14 1714.0 15 1682.5 16 1651.0 17 1727.0 18 1803.0 19 1805.0 20 1807.0 21 2033.5 22 2260.0 23 2309.5 24 2359.0 25 2715.5 26 3411.5 27 3751.0 28 4870.0 29 5989.0 30 6669.5 31 7350.0 32 8442.5 33 9535.0 34 10880.0 35 12225.0 36 13289.5 37 14354.0 38 14969.5 39 15585.0 40 18504.0 41 21423.0 42 25295.0 43 29167.0 44 37519.0 45 45871.0 46 47642.5 47 49414.0 48 47793.0 49 46172.0 50 44289.0 51 42406.0 52 40863.0 53 39320.0 54 36245.5 55 33171.0 56 29423.0 57 25675.0 58 22743.5 59 19812.0 60 17215.5 61 14619.0 62 13161.5 63 11704.0 64 9928.5 65 8153.0 66 7159.0 67 6165.0 68 5315.0 69 4465.0 70 3759.5 71 3054.0 72 2881.0 73 2708.0 74 2610.5 75 2272.0 76 2031.0 77 1396.5 78 762.0 79 610.0 80 458.0 81 338.5 82 219.0 83 169.5 84 120.0 85 91.5 86 63.0 87 49.5 88 36.0 89 26.0 90 16.0 91 15.5 92 15.0 93 14.5 94 14.0 95 10.5 96 7.0 97 7.0 98 7.0 99 10.5 100 14.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 504716.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.769679277989148 #Duplication Level Percentage of deduplicated Percentage of total 1 78.65846696694538 23.41637334104268 2 8.590889347066067 5.114960411497009 3 3.01443165164383 2.6921599042456776 4 1.4618298101580849 1.740728184296398 5 0.9284539093673115 1.3819887553130037 6 0.672366063493646 1.200967324056596 7 0.5127206666087085 1.0684470862896638 8 0.4292914767740536 1.0223895664270324 9 0.32818932955156327 0.8793081974887491 >10 4.185176563844801 29.43006827975814 >50 1.0838698826080913 22.002661367688773 >100 0.1249591048382941 5.29531976806209 >500 0.006014074564409878 1.2753407353035824 >1k 0.003341152535783265 3.479287078530597 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGT 3952 0.783014606234001 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCC 3705 0.7340761933443758 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3617 0.7166406454322827 No Hit AATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT 3456 0.6847415180022032 No Hit CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT 2760 0.5468421845156484 No Hit AATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT 918 0.18188446571933523 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 881 0.17455361034720518 No Hit AAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT 881 0.17455361034720518 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 717 0.1420600892383043 No Hit AATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT 650 0.1287852970779607 No Hit AACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTG 636 0.12601145991012766 No Hit AAAAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT 587 0.11630302982271218 No Hit CGCAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 583 0.11551050491761704 No Hit CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 558 0.1105572242607724 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7150555956220924 0.0 2 0.0 0.0 0.0 0.9205176772680081 0.0 3 0.0 0.0 0.0 1.3367913836692318 0.0 4 0.0 0.0 0.0 3.4292552643466823 0.0 5 0.0 0.0 0.0 3.694552976327281 0.0 6 0.0 0.0 0.0 4.866102917284175 0.0 7 0.0 0.0 0.0 5.708755022626586 0.0 8 0.0 0.0 0.0 6.166240024092757 0.0 9 0.0 0.0 0.0 7.864026502032826 0.0 10 0.0 0.0 0.0 8.961277233137052 0.0 11 0.0 0.0 0.0 10.893651082985283 0.0 12 0.0 0.0 0.0 11.460108258902036 0.0 13 0.0 0.0 0.0 11.711933047496018 0.0 14 0.0 0.0 0.0 12.069559910920201 0.0 15 0.0 0.0 0.0 12.312270663105588 0.0 16 0.0 0.0 0.0 12.78124727569564 0.0 17 0.0 0.0 0.0 13.359196062736272 0.0 18 0.0 0.0 0.0 14.05523106063608 0.0 19 0.0 0.0 0.0 14.36966531673258 0.0 20 0.0 0.0 0.0 14.72412208053638 0.0 21 0.0 0.0 0.0 15.128507913361178 0.0 22 0.0 0.0 0.0 15.547555456930233 0.0 23 0.0 0.0 0.0 15.968386181535754 0.0 24 0.0 0.0 0.0 16.266771808304075 0.0 25 0.0 0.0 0.0 16.548316280839124 0.0 26 0.0 0.0 0.0 16.798159757170367 0.0 27 0.0 0.0 0.0 17.116754769018616 0.0 28 1.9813122627378564E-4 0.0 0.0 17.410385246356366 0.0 29 1.9813122627378564E-4 0.0 0.0 17.737896163386935 0.0 30 1.9813122627378564E-4 0.0 0.0 18.1599156753501 0.0 31 3.962624525475713E-4 0.0 0.0 18.455131202498038 0.0 32 3.962624525475713E-4 0.0 0.0 18.74321400550012 0.0 33 3.962624525475713E-4 0.0 0.0 19.041005238589623 0.0 34 3.962624525475713E-4 0.0 0.0 19.355637625912394 0.0 35 3.962624525475713E-4 0.0 0.0 19.678195262286117 0.0 36 3.962624525475713E-4 0.0 0.0 19.962909834441547 0.0 37 5.94393678821357E-4 0.0 0.0 20.259116017720856 0.0 38 5.94393678821357E-4 0.0 0.0 20.578305423247926 0.0 39 5.94393678821357E-4 0.0 0.0 21.040941836597217 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTAACG 35 1.2101191E-7 45.000004 1 GACGTGT 25 3.8876846E-5 45.000004 40 CGGTTCG 25 3.8876846E-5 45.000004 29 CGCATAG 35 1.2101191E-7 45.000004 1 CGGGCTC 35 1.2101191E-7 45.000004 6 GTATCGG 25 3.8876846E-5 45.000004 2 GCGATAG 35 1.2101191E-7 45.000004 1 CGTAACG 25 3.8876846E-5 45.000004 1 TTTGCGG 35 1.2101191E-7 45.000004 2 AACTCGT 25 3.8876846E-5 45.000004 41 TAAGCGA 25 3.8876846E-5 45.000004 13 TAGTACG 25 3.8876846E-5 45.000004 1 TACCCTA 20 7.029522E-4 45.0 26 ACCGGCC 20 7.029522E-4 45.0 18 GATCGCC 20 7.029522E-4 45.0 33 ACCGCGT 20 7.029522E-4 45.0 42 CGGCATT 20 7.029522E-4 45.0 33 TTATGCC 20 7.029522E-4 45.0 43 TAGCGCA 20 7.029522E-4 45.0 25 TCTTACG 20 7.029522E-4 45.0 1 >>END_MODULE