##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553024_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 355902 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.259799045804744 31.0 31.0 34.0 30.0 34.0 2 31.437468741395104 31.0 31.0 34.0 30.0 34.0 3 31.60901034554456 31.0 31.0 34.0 30.0 34.0 4 35.39646307129491 37.0 35.0 37.0 33.0 37.0 5 34.76902630499407 35.0 35.0 37.0 32.0 37.0 6 34.786865485442625 35.0 35.0 37.0 32.0 37.0 7 34.616321346887624 35.0 35.0 37.0 31.0 37.0 8 35.11087040814606 36.0 35.0 37.0 32.0 37.0 9 36.76582036628061 39.0 35.0 39.0 32.0 39.0 10 36.13357047726621 37.0 35.0 39.0 32.0 39.0 11 36.13670898168597 37.0 35.0 39.0 32.0 39.0 12 35.54738102061803 37.0 35.0 39.0 30.0 39.0 13 35.459907502627125 37.0 35.0 39.0 30.0 39.0 14 36.19181122893381 38.0 35.0 40.0 30.0 41.0 15 36.39227371579817 38.0 35.0 40.0 31.0 41.0 16 36.247396755286566 38.0 34.0 40.0 30.0 41.0 17 36.09518350557176 38.0 34.0 40.0 30.0 41.0 18 35.77840529134425 37.0 34.0 40.0 29.0 41.0 19 35.73198801917382 37.0 34.0 40.0 29.0 41.0 20 35.752802737832326 37.0 34.0 40.0 30.0 41.0 21 35.94950295306011 37.0 34.0 40.0 30.0 41.0 22 35.92191108788374 37.0 34.0 40.0 30.0 41.0 23 35.721339020292106 37.0 34.0 40.0 30.0 41.0 24 35.212519176627275 37.0 33.0 40.0 27.0 41.0 25 35.394861506819296 37.0 34.0 40.0 28.0 41.0 26 35.329601969081374 37.0 34.0 40.0 27.0 41.0 27 35.26264814471399 37.0 34.0 40.0 27.0 41.0 28 35.150853324791655 37.0 33.0 40.0 27.0 41.0 29 34.90745486116965 37.0 33.0 40.0 26.0 41.0 30 34.99741220897888 37.0 34.0 40.0 26.0 41.0 31 34.682480008541674 37.0 33.0 40.0 25.0 41.0 32 34.362192401279 37.0 33.0 40.0 24.0 41.0 33 34.48108468061432 37.0 33.0 40.0 24.0 41.0 34 34.370956049699075 37.0 33.0 40.0 24.0 41.0 35 34.20898730549421 37.0 33.0 40.0 23.0 41.0 36 34.0645542874162 37.0 33.0 40.0 23.0 41.0 37 33.69892835668246 37.0 33.0 40.0 21.0 41.0 38 33.61553461346101 36.0 33.0 40.0 21.0 41.0 39 33.238298745160186 36.0 32.0 39.0 19.0 41.0 40 32.95714831610949 36.0 31.0 39.0 18.0 40.0 41 33.166846491449895 36.0 32.0 39.0 18.0 40.0 42 32.969092615382884 36.0 32.0 39.0 17.0 40.0 43 32.98563930520199 36.0 32.0 39.0 17.0 40.0 44 32.865974341251246 36.0 32.0 39.0 16.0 40.0 45 32.41441183247073 35.0 31.0 39.0 15.0 40.0 46 32.4132092542329 35.0 31.0 39.0 15.0 40.0 47 32.294384409191295 35.0 31.0 39.0 15.0 40.0 48 32.333709841473215 35.0 31.0 39.0 13.0 40.0 49 32.156661103337434 35.0 31.0 39.0 12.0 40.0 50 31.920053835044477 35.0 30.0 39.0 11.0 40.0 51 30.050435232170653 34.0 26.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 5.0 11 6.0 12 2.0 13 11.0 14 12.0 15 48.0 16 104.0 17 253.0 18 494.0 19 1053.0 20 1838.0 21 2877.0 22 3967.0 23 4784.0 24 5279.0 25 5547.0 26 5830.0 27 6536.0 28 7510.0 29 9123.0 30 11424.0 31 14620.0 32 18777.0 33 24302.0 34 35669.0 35 39560.0 36 36774.0 37 44625.0 38 48815.0 39 26052.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.04683311698164 47.10650684739057 16.89594326528089 19.950716770346894 2 15.859983928159998 48.6816595579682 16.369112845671 19.089243668200798 3 16.192378800905868 32.16334833746368 31.958235694095567 19.686037167534884 4 26.884648021084455 32.912711926316796 16.22581497153711 23.97682508106164 5 13.508774887469022 46.933987445982325 18.156121628987755 21.401116037560904 6 19.60033941927834 35.00879455580469 27.75707919595844 17.633786828958534 7 61.80830678108018 22.785766868407595 9.523408129204107 5.882518221308112 8 64.30646638681435 11.699568982472703 5.8704362436850595 18.12352838702789 9 64.39469292108501 14.698709195227899 12.204764232850616 8.701833650836466 10 34.71686025928486 35.30859618659069 14.382891919685756 15.591651634438694 11 27.06025816095442 26.49212423644711 27.778714365190417 18.66890323740805 12 25.127141741265852 26.60591960708285 34.62189029564318 13.645048356008116 13 22.30895021663267 37.339492332158855 20.6863125242342 19.665244926974278 14 12.111199150327899 35.980129361453436 36.948654404864264 14.960017083354407 15 11.421121544694888 35.01553798517569 28.6477738253789 24.915566644750523 16 14.334564009193542 31.054054205933095 34.94304611943737 19.66833566543599 17 13.822625329444621 32.749464740293675 27.154947148372305 26.272962781889397 18 16.216823732375765 33.75816938370675 24.9650184601379 25.05998842377958 19 17.07801585829807 36.831768295766814 30.191738175115624 15.898477670819494 20 18.627599732510635 41.012132553343335 22.024040325707638 18.336227388438388 21 14.116807435754787 33.54828014453417 27.00687267843395 25.32803974127709 22 15.468303072194031 38.554433523835215 26.1926035818849 19.784659822085853 23 18.678175452793187 33.76519378930155 19.064517760507105 28.492112997398163 24 12.635781760147458 44.540912947946346 23.422178015296346 19.401127276609852 25 15.452849379885475 31.837696894088825 26.258632994476006 26.450820731549697 26 18.769492725525566 38.8269804609134 19.379492107377875 23.024034706183162 27 12.099679125152429 34.04504610819832 28.708464689717957 25.146810076931292 28 20.06029749762575 29.595787604452912 23.54440267264584 26.799512225275496 29 14.180308062331765 35.65138717961686 31.31114745070272 18.85715730734865 30 20.149647936791588 29.995897747132638 20.430905136807322 29.42354917926845 31 26.81131322667476 33.511191282993636 21.179425796989058 18.49806969334255 32 20.173811892037698 27.91920247708639 24.21818365729892 27.688801973577 33 23.793909559373088 27.423279442093612 24.770582913273877 24.012228085259427 34 16.209518350557175 26.53679945603003 31.94587274024872 25.307809453164072 35 19.925990862653205 26.4994296182657 25.18333698602424 28.391242533056854 36 24.337317576186702 23.522205550966277 33.90680580609269 18.233671066754333 37 19.738298745160186 27.42580822810774 26.363156149726606 26.47273687700547 38 27.277452781945595 26.49184326022332 28.676433400205674 17.554270557625415 39 18.026872566043462 25.73095964619474 36.98433838528584 19.257829402475963 40 25.76776753151148 27.32521873999022 27.033565419694185 19.873448308804107 41 18.471095975858525 21.702322549465862 38.410011744806155 21.416569729869458 42 27.783490960994882 24.42975875381425 23.336761243263595 24.44998904192727 43 22.14289326837163 23.54131193418413 30.009665582098442 24.3061292153458 44 19.95717922349411 23.351372006900775 27.726733763788907 28.964715005816206 45 27.31988019173818 29.728408382082712 23.009423942545983 19.942287483633134 46 17.17607656040146 23.899275643295066 39.08266882456407 19.84197897173941 47 22.373855724328607 27.138931503616163 25.15945400700193 25.3277587650533 48 19.29800900247821 21.227753707481273 37.24620822585993 22.22802906418059 49 23.251063495007052 20.53458536338655 30.42017184505847 25.794179296547924 50 20.569145438912958 23.430326325786314 25.346022219599778 30.65450601570095 51 16.133092817685768 24.031053492253484 35.29567128029626 24.540182409764487 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5948.0 1 4799.5 2 3651.0 3 2615.5 4 1580.0 5 1579.0 6 1578.0 7 1816.0 8 2054.0 9 2410.5 10 2767.0 11 3074.0 12 3381.0 13 3548.5 14 3716.0 15 3564.0 16 3412.0 17 3151.5 18 2891.0 19 2744.0 20 2597.0 21 2405.5 22 2214.0 23 2226.5 24 2239.0 25 2344.5 26 2601.0 27 2752.0 28 2849.5 29 2947.0 30 3289.5 31 3632.0 32 4060.0 33 4488.0 34 5182.0 35 5876.0 36 6464.0 37 7052.0 38 7678.0 39 8304.0 40 10359.5 41 12415.0 42 16008.0 43 19601.0 44 38407.5 45 57214.0 46 54343.0 47 51472.0 48 45055.0 49 38638.0 50 33495.5 51 28353.0 52 24817.0 53 21281.0 54 18159.0 55 15037.0 56 12809.5 57 10582.0 58 9262.5 59 7943.0 60 6808.0 61 5673.0 62 4632.5 63 3592.0 64 3066.0 65 2540.0 66 2224.0 67 1908.0 68 1486.0 69 1064.0 70 1012.5 71 961.0 72 877.5 73 794.0 74 711.0 75 445.0 76 262.0 77 198.0 78 134.0 79 141.5 80 149.0 81 105.5 82 62.0 83 43.0 84 24.0 85 20.5 86 17.0 87 14.0 88 11.0 89 9.5 90 8.0 91 5.0 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 2.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 355902.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.54184438240667 #Duplication Level Percentage of deduplicated Percentage of total 1 80.49456066874195 30.219142702561037 2 8.731089999593115 6.555624441070237 3 3.0977793036122487 3.4888904564175345 4 1.61852555516044 2.430497380831264 5 1.017517215415959 1.9099736478782852 6 0.6814265537860471 1.534920578416527 7 0.4885154947499695 1.283784087760843 8 0.38505823670445616 1.1564637120418086 9 0.3281082370151228 1.108600953714679 >10 2.767142568976354 21.607169110316672 >50 0.32585438064545397 8.131545728914672 >100 0.05093815605492154 3.380293261682668 >500 0.005243633711536041 1.414267455324637 >1k 0.005243633711536041 4.052696022804404 >5k 7.490905302194344E-4 1.4153923449291903 >10k+ 0.0022472715906583034 10.310738115335552 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGT 13587 3.8176239526611253 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC 12411 3.487195913481801 No Hit AATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT 10666 2.996892402964861 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5033 1.4141533343448478 No Hit CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT 3854 1.0828823664941474 TruSeq Adapter, Index 27 (95% over 23bp) AATGACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTT 2980 0.8373091468999894 No Hit AATGATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCT 2002 0.5625144000314694 No Hit AACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTG 1733 0.48693179583143675 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTAT 1644 0.46192491191395385 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1180 0.33155194407449246 No Hit AAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT 1018 0.2860337958201977 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 947 0.2660844839309698 No Hit AAAAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTT 860 0.24163955246107072 No Hit AATGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTC 739 0.20764142938224567 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCGTTTGTC 666 0.18713016504543384 No Hit AGGGAGGGACATACACACACGCACACACACCCACACACAGTAATCTGTAAC 629 0.17673404476513196 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 621 0.17448623497479643 No Hit AATGATACCTGTCTCTTCTACACATCTGACGCCTCGTTTGTCGTATGCCGT 567 0.1593135188900315 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATG 493 0.13852127832942776 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCT 475 0.1334637063011728 No Hit AATGATACGGCCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC 413 0.11604318042607235 No Hit AATCTGTCTCTTATACCCATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT 413 0.11604318042607235 No Hit AATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTA 358 0.1005894881175155 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.3790313063708548 0.0 2 0.0 0.0 0.0 1.657759720372462 0.0 3 0.0 0.0 0.0 2.6667453400093284 0.0 4 0.0 0.0 0.0 7.955279824221274 0.0 5 0.0 0.0 0.0 8.510488842434153 0.0 6 0.0 0.0 0.0 10.944866845367544 0.0 7 0.0 0.0 0.0 12.68972919511551 0.0 8 0.0 0.0 0.0 13.545020820338182 0.0 9 0.0 0.0 0.0 19.097672954914554 0.0 10 0.0 0.0 0.0 20.830453327039464 0.0 11 0.0 0.0 0.0 26.53623750358245 0.0 12 0.0 0.0 0.0 27.596360795949447 0.0 13 0.0 0.0 0.0 28.170395221156387 0.0 14 0.0 0.0 0.0 29.087501615613288 0.0 15 0.0 0.0 0.0 29.52470061983355 0.0 16 0.0 0.0 0.0 30.144815145742367 0.0 17 0.0 0.0 0.0 30.88181578074863 0.0 18 0.0 0.0 0.0 32.03775196542868 0.0 19 0.0 0.0 0.0 32.49518125776197 0.0 20 0.0 0.0 0.0 32.92114121303055 0.0 21 0.0 0.0 0.0 33.431675011660516 0.0 22 0.0 0.0 0.0 33.94951419210906 0.0 23 0.0 0.0 0.0 34.40891031800889 0.0 24 0.0 0.0 0.0 34.77614624250496 0.0 25 0.0 0.0 0.0 35.03464436839354 0.0 26 0.0 0.0 0.0 35.32348792645166 0.0 27 0.0 0.0 0.0 35.68594725514327 0.0 28 0.0 0.0 0.0 35.98265814746756 0.0 29 0.0 0.0 0.0 36.346522357278126 0.0 30 0.0 0.0 0.0 36.80648043562554 0.0 31 0.0 0.0 0.0 37.129884069210064 0.0 32 0.0 0.0 0.0 37.4111412692258 0.0 33 0.0 0.0 0.0 37.7143146146973 0.0 34 0.0 0.0 0.0 37.99276205247512 0.0 35 0.0 0.0 0.0 38.32431399654961 0.0 36 2.809762237919427E-4 0.0 0.0 38.615686340621856 0.0 37 2.809762237919427E-4 0.0 0.0 38.92756994903091 0.0 38 2.809762237919427E-4 0.0 0.0 39.232148175621376 0.0 39 2.809762237919427E-4 0.0 0.0 39.71458435187215 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAGAC 30 2.1612632E-6 45.000004 21 GTGCAGA 30 2.1612632E-6 45.000004 19 TAATACG 30 2.1612632E-6 45.000004 1 AGCAACG 30 2.1612632E-6 45.000004 1 CTCACGT 30 2.1612632E-6 45.000004 45 CTCACGA 30 2.1612632E-6 45.000004 24 ACACGAC 30 2.1612632E-6 45.000004 26 CCTAGCG 30 2.1612632E-6 45.000004 1 GCAACGG 60 0.0 45.000004 2 CACGACC 30 2.1612632E-6 45.000004 27 CGAGACA 30 2.1612632E-6 45.000004 22 CCTATGT 30 2.1612632E-6 45.000004 10 TACAGCG 30 2.1612632E-6 45.000004 1 CGTCCGG 30 2.1612632E-6 45.000004 2 GCGTAGG 30 2.1612632E-6 45.000004 2 GCTCACG 30 2.1612632E-6 45.000004 44 AACACGT 30 2.1612632E-6 45.000004 41 TGATCGG 20 7.026717E-4 45.0 2 AGGTACG 20 7.026717E-4 45.0 1 AGCCGAC 20 7.026717E-4 45.0 41 >>END_MODULE