##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553023_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 313082 Sequences flagged as poor quality 0 Sequence length 46 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.09819152809807 31.0 31.0 33.0 28.0 34.0 2 31.33927533361867 31.0 31.0 34.0 30.0 34.0 3 31.568767926613475 31.0 31.0 34.0 30.0 34.0 4 35.46085051200644 37.0 35.0 37.0 33.0 37.0 5 34.809050025233006 35.0 35.0 37.0 32.0 37.0 6 34.92642822008292 35.0 35.0 37.0 32.0 37.0 7 34.215253511859515 35.0 35.0 37.0 30.0 37.0 8 35.11916047553037 35.0 35.0 37.0 32.0 37.0 9 36.50672347819421 38.0 35.0 39.0 32.0 39.0 10 36.19687813416294 37.0 35.0 39.0 32.0 39.0 11 36.31297870845338 37.0 35.0 39.0 32.0 39.0 12 35.816137625286665 37.0 35.0 39.0 31.0 39.0 13 35.500220389546506 37.0 35.0 39.0 30.0 39.0 14 36.44132208175494 38.0 35.0 40.0 31.0 41.0 15 36.59146166180106 38.0 35.0 40.0 31.0 41.0 16 36.41800550654461 38.0 35.0 40.0 31.0 41.0 17 36.41329108668017 38.0 35.0 40.0 31.0 41.0 18 36.14016455752806 38.0 35.0 40.0 30.0 41.0 19 35.82733916354182 37.0 34.0 40.0 29.0 41.0 20 35.851633118480144 37.0 34.0 40.0 30.0 41.0 21 36.0913754224133 38.0 34.0 40.0 30.0 41.0 22 35.952622635603454 38.0 34.0 40.0 30.0 41.0 23 35.710085536696454 37.0 34.0 40.0 29.0 41.0 24 35.31572239860484 37.0 34.0 40.0 27.0 41.0 25 35.61497946224951 37.0 34.0 40.0 29.0 41.0 26 35.44954357005513 37.0 34.0 40.0 28.0 41.0 27 35.282437188979245 37.0 34.0 40.0 27.0 41.0 28 35.41602519467743 37.0 34.0 40.0 27.0 41.0 29 35.01706581662312 37.0 33.0 40.0 25.0 41.0 30 35.311969388211395 37.0 34.0 40.0 27.0 41.0 31 34.926482518956696 37.0 34.0 40.0 25.0 41.0 32 34.616637174925415 37.0 33.0 40.0 24.0 41.0 33 34.60839013421404 37.0 34.0 40.0 24.0 41.0 34 34.395864342249 37.0 34.0 40.0 23.0 41.0 35 34.2451817734651 37.0 33.0 40.0 22.0 41.0 36 34.17734012175724 37.0 33.0 40.0 22.0 41.0 37 33.97173583917312 37.0 33.0 40.0 21.0 41.0 38 33.772717690573074 37.0 33.0 40.0 20.0 41.0 39 33.51405702020557 37.0 33.0 40.0 19.0 41.0 40 33.25028906165158 36.0 32.0 40.0 18.0 41.0 41 33.365709302994105 37.0 33.0 40.0 17.0 41.0 42 33.32814406449429 37.0 33.0 40.0 16.0 41.0 43 33.42059588222894 37.0 33.0 40.0 17.0 41.0 44 33.37243916929111 37.0 33.0 40.0 17.0 41.0 45 33.10870315125111 36.0 32.0 40.0 15.0 41.0 46 31.975402610178804 35.0 30.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 9.0 12 7.0 13 2.0 14 12.0 15 27.0 16 49.0 17 105.0 18 221.0 19 452.0 20 993.0 21 1909.0 22 3044.0 23 4071.0 24 4780.0 25 5112.0 26 5263.0 27 5222.0 28 5745.0 29 6685.0 30 8324.0 31 10743.0 32 14449.0 33 19303.0 34 29808.0 35 34760.0 36 31607.0 37 41619.0 38 50222.0 39 28536.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 16.37813735698635 46.40605336621077 16.912182750844824 20.303626525958055 2 16.308187631355363 47.97401319782038 15.871241400016608 19.84655777080765 3 16.44712886719773 32.27237592707342 31.356641391073264 19.923853814655583 4 27.234079250803305 33.05843197628736 16.224503484710077 23.482985288199256 5 13.523613621990405 47.226285765390536 17.812905245271207 21.437195367347854 6 18.9327396656467 35.10549951769824 28.404060278137994 17.557700538517064 7 61.984080847829006 23.23768214078101 8.978478481675726 5.79975852971426 8 64.30136513756779 11.635290435093681 5.801355555413598 18.261988871924927 9 66.29062034866266 14.500673944845122 11.494752173551976 7.713953532940251 10 36.82932905756319 34.83144990769191 13.526488268249212 14.812732766495678 11 25.933780926402665 26.414166256763405 26.98302681086744 20.669026005966487 12 27.83136686235555 26.150976421512574 32.382890105467574 13.634766610664299 13 21.50778390325857 39.015018429676566 21.128969407375703 18.348228259689154 14 12.095233836502898 35.45908100753157 34.584549734574324 17.8611354213912 15 11.29672098683412 34.026868360365654 29.07097821018136 25.605432442618863 16 14.080336780779476 33.68095259388914 33.327690509195676 18.91102011613571 17 13.576634875208413 31.890686784931745 26.427900677777703 28.104777662082135 18 16.141138743204657 32.54035683942226 24.8235286602232 26.494975757149884 19 19.18123686446362 35.988015919152176 29.055327358327848 15.775419858056356 20 18.815517979315324 41.18888981161485 21.917900102848456 18.077692106221374 21 14.039772328016303 33.57075782063485 29.03392721395673 23.35554263739212 22 17.209548936061477 36.72232833570758 25.91940769510863 20.148715033122315 23 17.533745153027002 35.897304859429795 19.880414715633606 26.688535271909597 24 12.708811110188384 43.95589653828709 23.652589417468906 19.682702934055616 25 15.109779546572463 31.9235855143381 28.259689154917883 24.70694578417156 26 19.63798621447416 37.89710044014028 20.555956586453387 21.908956758932167 27 11.864303920378687 36.46840124951291 27.527612574341546 24.139682255766857 28 18.817753815294395 29.607259440018908 26.65340070652417 24.921586038162527 29 14.211612293265022 37.17428660862011 30.056343066672632 18.557758031442244 30 19.198165336876603 30.27737142346095 20.726199526002773 29.79826371365968 31 27.032215202407038 33.261254240103234 21.126094761116896 18.580435796372836 32 21.91374783603018 28.163867612957628 23.46445979008694 26.457924760925255 33 22.826607725771524 27.9271884043158 24.22847688465003 25.017726985262644 34 17.9623868507292 26.482838361834922 31.095367986661643 24.45940680077424 35 18.8196702461336 27.94251985102944 25.451479165202727 27.78633073763423 36 23.41750723452642 23.662490976804797 33.365699720839906 19.554302067828875 37 20.13913287892629 27.292849796538928 26.043336889377223 26.52468043515756 38 25.963485604410348 27.822742923579124 27.80325921004721 18.41051226196332 39 17.822167994327366 25.632901284647474 35.07355900371149 21.471371717313676 40 25.118020199181046 26.64701260372682 26.52595805571703 21.709009141375102 41 18.71714119623613 21.915344861729515 36.559431714375144 22.808082227659206 42 26.439399262812934 24.963428111485168 23.77013050894015 24.827042116761746 43 21.28324208993171 23.49128982183581 30.989964290505362 24.235503797727112 44 20.268811365712498 23.370235273826026 27.665914999904178 28.695038360557295 45 27.096415635520405 29.25783021700385 23.394190659316088 20.25156348815965 46 17.234462536971147 25.431037236251207 37.74761883468229 19.58688139209536 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6847.0 1 5466.0 2 4085.0 3 3076.5 4 2068.0 5 2231.0 6 2394.0 7 2394.0 8 2449.5 9 2505.0 10 2674.0 11 2843.0 12 3009.5 13 3176.0 14 3081.5 15 2987.0 16 2823.5 17 2660.0 18 2501.0 19 2342.0 20 2342.0 21 2183.5 22 2025.0 23 2081.5 24 2138.0 25 2184.0 26 2230.0 27 2455.0 28 2680.0 29 2897.0 30 3114.0 31 3114.0 32 3349.0 33 3584.0 34 4145.5 35 4707.0 36 5471.0 37 6235.0 38 7512.0 39 8789.0 40 15646.5 41 22504.0 42 22306.0 43 22108.0 44 22108.0 45 34463.0 46 46818.0 47 43327.0 48 39836.0 49 35961.5 50 32087.0 51 28292.5 52 24498.0 53 20669.0 54 16840.0 55 14901.5 56 12963.0 57 12963.0 58 11167.0 59 9371.0 60 7904.0 61 6437.0 62 5268.5 63 4100.0 64 3487.5 65 2875.0 66 2289.5 67 1704.0 68 1577.0 69 1450.0 70 1450.0 71 1053.0 72 656.0 73 665.5 74 675.0 75 535.0 76 395.0 77 295.5 78 196.0 79 147.0 80 98.0 81 98.0 82 64.5 83 31.0 84 26.0 85 21.0 86 13.0 87 5.0 88 3.5 89 2.0 90 1.0 91 0.0 92 1.5 93 3.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 313082.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.25523720783006 #Duplication Level Percentage of deduplicated Percentage of total 1 74.95645672184344 24.926947485433516 2 10.90923514657597 7.2557840511076135 3 3.9608956063508782 3.95161568833951 4 2.102599821990506 2.7968982333374215 5 1.3964116753448945 2.3219000751688923 6 0.9252569284337341 1.8461783179951243 7 0.6867036629330678 1.5985545241627468 8 0.5529558718709511 1.4710942947624772 9 0.47011227259929594 1.407032562564149 >10 3.6521035870574328 25.26650735916563 >50 0.3124100635694292 6.765307247171775 >100 0.05888879792522786 3.9263477297024294 >500 0.003992460876286635 1.0146965094006533 >1k 0.00798492175257327 4.709692107257399 >5k 0.003992460876286635 10.741443814430664 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTAT 9971 3.18478864961895 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGT 9045 2.8890194901016346 No Hit AATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGT 7518 2.401287841523946 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5827 1.8611737500079852 No Hit CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTT 3344 1.0680907877169559 No Hit AATGACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC 2117 0.6761806810995202 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTCGT 1912 0.6107026274266805 No Hit AACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTC 1539 0.49156451025609904 No Hit AATGATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC 1474 0.4708031761647109 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTCGTTTGT 1452 0.4637762630876256 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1296 0.4139490612682939 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1055 0.33697242256022386 No Hit AAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGT 1000 0.31940513986751073 No Hit AAAAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC 773 0.24690017311758578 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 682 0.21783430538964235 No Hit AATGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCG 602 0.19228189420024147 No Hit AGGGAGGGACATACACACACGCACACACACCCACACACAGTAATCT 493 0.1574667339546828 No Hit AATGATACCTGTCTCTTCTACACATCTGACGCCTCGTTTGTCGTAT 457 0.1459681489194524 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC 455 0.1453293386397174 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 425 0.13574718444369208 No Hit CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCT 385 0.12297097884899164 No Hit AATGATACGGCCTGTCTCTTATACACATCTGACGCCTCGTTTGTCG 382 0.12201276342938909 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCCTCGTTTGTC 366 0.11690228119150894 No Hit AATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCTCG 339 0.10827834241508615 No Hit AATCTGTCTCTTATACCCATCTGACGCCTCGTTTGTCGTATGCCGT 326 0.1041260755968085 No Hit AACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGT 325 0.103806670456941 No Hit AATGATACGGCGACCTGTCTCTTATACACATCTGACGCCTCGTTTG 325 0.103806670456941 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.1940513986751073E-4 0.0 0.0 1.1635929245373418 0.0 2 3.1940513986751073E-4 0.0 0.0 1.486511520943395 0.0 3 3.1940513986751073E-4 0.0 0.0 2.388192230789378 0.0 4 3.1940513986751073E-4 0.0 0.0 6.864655266032541 0.0 5 3.1940513986751073E-4 0.0 0.0 7.401575306149827 0.0 6 3.1940513986751073E-4 0.0 0.0 9.71598494962981 0.0 7 3.1940513986751073E-4 0.0 0.0 11.35708855826908 0.0 8 3.1940513986751073E-4 0.0 0.0 12.258130457835328 0.0 9 3.1940513986751073E-4 0.0 0.0 16.899725950389993 0.0 10 3.1940513986751073E-4 0.0 0.0 18.771759475153473 0.0 11 3.1940513986751073E-4 0.0 0.0 23.733718322995255 0.0 12 3.1940513986751073E-4 0.0 0.0 24.86569013868571 0.0 13 3.1940513986751073E-4 0.0 0.0 25.43327307223028 0.0 14 3.1940513986751073E-4 0.0 0.0 26.3119566120058 0.0 15 3.1940513986751073E-4 0.0 0.0 26.742834145687073 0.0 16 3.1940513986751073E-4 0.0 0.0 27.395059441296528 0.0 17 3.1940513986751073E-4 0.0 0.0 28.17376917229352 0.0 18 6.388102797350215E-4 0.0 0.0 29.884822506563776 0.0 19 6.388102797350215E-4 0.0 0.0 30.449211388709667 0.0 20 6.388102797350215E-4 0.0 0.0 30.896697989664048 0.0 21 6.388102797350215E-4 0.0 0.0 31.46619735404782 0.0 22 6.388102797350215E-4 0.0 0.0 32.00279798902524 0.0 23 6.388102797350215E-4 0.0 0.0 32.48541915536505 0.0 24 6.388102797350215E-4 0.0 0.0 32.83133492184156 0.0 25 6.388102797350215E-4 0.0 0.0 33.10219048044921 0.0 26 6.388102797350215E-4 0.0 0.0 33.406583578742946 0.0 27 6.388102797350215E-4 0.0 0.0 33.778690566688596 0.0 28 6.388102797350215E-4 0.0 0.0 34.10192856823452 0.0 29 6.388102797350215E-4 0.0 0.0 34.45199660152931 0.0 30 6.388102797350215E-4 0.0 0.0 34.900760823043164 0.0 31 6.388102797350215E-4 0.0 0.0 35.22623466056816 0.0 32 9.582154196025322E-4 0.0 0.0 35.50315891683329 0.0 33 9.582154196025322E-4 0.0 0.0 35.81489833334398 0.0 34 9.582154196025322E-4 0.0 0.0 36.13941395544937 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAGAT 45 1.2150849E-9 40.0 18 TTGATGG 30 4.856158E-6 40.0 2 GTCATAG 20 0.0012543697 40.0 1 GTGCAGG 55 5.456968E-12 40.0 2 CGGGTGA 20 0.0012543697 40.0 6 AACGTAG 20 0.0012543697 40.0 13 CGGGTAC 35 3.04688E-7 40.0 6 CGGCGAT 100 0.0 40.0 30 CGGCGAA 20 0.0012543697 40.0 30 GGAGCTA 20 0.0012543697 40.0 8 ACAGTAG 30 4.856158E-6 40.0 1 TCGCACG 30 4.856158E-6 40.0 1 CGAACCC 20 0.0012543697 40.0 33 ACACGAG 25 7.781648E-5 40.0 37 CCCTCGA 45 1.2150849E-9 40.0 40 GTACAGT 20 0.0012543697 40.0 13 TACCAGG 45 1.2150849E-9 40.0 2 ACGCATT 20 0.0012543697 40.0 27 TCACACG 30 4.856158E-6 40.0 1 ACCGCTA 20 0.0012543697 40.0 36 >>END_MODULE