##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553022_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 350937 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.28731082786939 31.0 31.0 34.0 30.0 34.0 2 31.444139546414313 31.0 31.0 34.0 30.0 34.0 3 31.704548109774688 31.0 31.0 34.0 30.0 34.0 4 35.54947184252444 37.0 35.0 37.0 33.0 37.0 5 35.00578166451528 35.0 35.0 37.0 32.0 37.0 6 34.998127869104714 35.0 35.0 37.0 32.0 37.0 7 35.08533155523641 36.0 35.0 37.0 32.0 37.0 8 35.42466311617185 37.0 35.0 37.0 33.0 37.0 9 36.977739594286156 39.0 37.0 39.0 33.0 39.0 10 36.18051388140891 38.0 35.0 39.0 31.0 39.0 11 36.241370958320154 38.0 35.0 39.0 32.0 39.0 12 35.88136617113613 37.0 35.0 39.0 31.0 39.0 13 35.51446270983111 37.0 35.0 39.0 30.0 39.0 14 36.297782792922945 38.0 35.0 40.0 30.0 41.0 15 36.42051137383633 38.0 35.0 40.0 31.0 41.0 16 36.476396048293566 38.0 35.0 40.0 31.0 41.0 17 36.37477951883101 38.0 35.0 40.0 31.0 41.0 18 36.22951697883096 38.0 35.0 40.0 30.0 41.0 19 36.2547665250458 38.0 34.0 40.0 30.0 41.0 20 36.144749627426 38.0 34.0 40.0 30.0 41.0 21 36.21429772295312 38.0 34.0 40.0 30.0 41.0 22 36.19633723431841 38.0 34.0 40.0 30.0 41.0 23 36.05808449949706 38.0 34.0 40.0 30.0 41.0 24 35.58447812570348 37.0 34.0 40.0 29.0 41.0 25 35.709865303459026 37.0 34.0 40.0 29.0 41.0 26 35.649532537179034 37.0 34.0 40.0 29.0 41.0 27 35.45364552612007 37.0 34.0 40.0 29.0 41.0 28 35.36912038343065 37.0 34.0 40.0 27.0 41.0 29 35.094105209766994 37.0 34.0 40.0 27.0 41.0 30 34.99860943702146 37.0 34.0 40.0 27.0 41.0 31 34.849406018744105 37.0 34.0 40.0 26.0 41.0 32 34.756135716667096 37.0 33.0 40.0 25.0 41.0 33 34.732778247947635 37.0 34.0 40.0 25.0 41.0 34 34.728181981381276 37.0 34.0 40.0 25.0 41.0 35 34.54331689163582 37.0 33.0 40.0 25.0 41.0 36 34.59575080427541 37.0 33.0 40.0 25.0 41.0 37 34.36690346130502 37.0 33.0 40.0 24.0 41.0 38 34.33655898352126 37.0 33.0 40.0 24.0 41.0 39 34.174347532463095 37.0 33.0 40.0 23.0 41.0 40 33.916415197029664 36.0 33.0 40.0 23.0 41.0 41 33.91947557538818 36.0 33.0 40.0 23.0 41.0 42 33.7889136796633 36.0 33.0 39.0 23.0 41.0 43 33.765687288601654 36.0 33.0 39.0 23.0 41.0 44 33.705893080524426 36.0 33.0 39.0 22.0 41.0 45 33.4776498345857 36.0 32.0 39.0 22.0 40.0 46 33.44316786203792 36.0 32.0 39.0 22.0 40.0 47 33.426595086867444 36.0 32.0 39.0 22.0 40.0 48 33.398148385607676 36.0 32.0 39.0 22.0 40.0 49 33.1625619413171 36.0 32.0 39.0 20.0 40.0 50 33.003915232648595 35.0 32.0 39.0 19.0 40.0 51 31.191230904692294 34.0 29.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 3.0 11 3.0 12 5.0 13 12.0 14 22.0 15 29.0 16 71.0 17 167.0 18 353.0 19 760.0 20 1292.0 21 1975.0 22 2657.0 23 3300.0 24 3847.0 25 4116.0 26 4866.0 27 5420.0 28 6681.0 29 8188.0 30 10636.0 31 13447.0 32 17485.0 33 23703.0 34 35423.0 35 39835.0 36 38631.0 37 48363.0 38 52618.0 39 27026.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.29463123010683 35.37842974664968 19.78560254404637 25.54133647919712 2 18.08273279819455 37.674568369821365 20.44013597882241 23.802562853161678 3 18.883161365145313 34.6996754403212 21.9167542892314 24.50040890530209 4 18.81505797336844 34.86580212402796 18.925334176789566 27.393805725814037 5 15.646113120018693 37.69821933851375 19.68472973781619 26.970937803651367 6 19.978229710745804 36.98498590915179 21.35055579776427 21.686228582338142 7 74.9325377489407 10.99057665620895 8.280688556635521 5.796197038214836 8 76.80808806138994 8.99335208313743 5.77254606952245 8.426013785950184 9 70.93552403992739 12.021530930052972 11.450203312845325 5.592741717174308 10 34.70879388608212 37.219500936065444 12.326998863043794 15.74470631480864 11 28.303370690465812 26.593662110293298 29.59477057135611 15.508196627884777 12 28.39427019664498 24.999643810712463 31.433277197901617 15.172808794740936 13 23.066533309397414 35.64286467371636 23.673479855358654 17.61712216152757 14 13.897651145362271 37.58680332937251 31.774079108216004 16.741466417049214 15 12.928816283264519 33.19085761831896 34.59538321693068 19.28494288148585 16 15.244046652248125 30.937461709651593 31.991497049327943 21.826994588772344 17 15.586558271142684 30.663053482533904 26.615603370405516 27.1347848759179 18 19.359885107583413 29.853791421252247 26.520144641345883 24.266178829818458 19 19.864534090164334 36.16803015925936 26.005237407283925 17.962198343292386 20 19.964552042104422 33.93230123925377 25.40512969564338 20.69801702299843 21 16.81127951740626 33.52966486862314 25.86760586658004 23.79144974739056 22 15.948446587279197 33.67612990365792 26.608764536084824 23.766658972978057 23 18.055947363771846 32.82241541929179 22.292320274009295 26.82931694292708 24 14.9097986248244 35.52916905313489 26.138594676537387 23.422437645503326 25 16.551118861790005 32.375896528436726 25.083704482570944 25.98928012720232 26 18.642662358201044 35.38840304670069 23.075651755158333 22.893282839939932 27 13.61754388964401 32.89251347107886 25.924311201155763 27.565631438121375 28 17.45697945785141 29.266221572532963 28.20848186426624 25.06831710534939 29 16.313754320576056 30.52941126185042 29.349712341531387 23.807122076042138 30 18.157390072862082 31.014398595759353 24.37275066464921 26.45546066672936 31 20.183394740366502 31.91199560034992 24.2903997013709 23.614209957912674 32 20.919994186990827 30.141022462721228 21.123164556601324 27.815818793686613 33 19.12793464354001 28.576639111863383 27.32570233403716 24.969723910559445 34 15.057118514149263 27.749140159059888 25.65560200263865 31.538139324152198 35 15.39564081302342 30.84998162063276 26.428390280876624 27.32598728546719 36 18.963517668413417 24.905609838802974 32.24424896776345 23.88662352502016 37 15.18762626910243 32.06814898400568 25.112769528433876 27.63145521845801 38 18.77146040457404 28.801465790156065 28.18711050701408 24.239963298255812 39 17.988128923425002 27.159005747470346 28.544154648840102 26.308710680264547 40 20.752442746133923 29.505865725187142 23.85470896485694 25.886982563822 41 16.243086365928928 25.403135035633177 29.817317638208568 28.536460960229327 42 21.35739463208496 28.953914805221448 24.140515249175778 25.548175313517813 43 17.844228451260484 27.00313731524462 28.63305949500908 26.519574738485822 44 20.37174763561551 25.446162701567516 25.629101519645975 28.552988143171 45 21.3964329779989 29.302410404146613 24.400960856222056 24.90019576163243 46 16.66054021092105 27.709816861715918 31.20446119958853 24.4251817277745 47 18.54720362914141 27.06896109558126 26.45745532673956 27.92637994853777 48 19.779618564015763 23.879214787839413 32.61753534110111 23.723631307043714 49 19.271265212844472 22.9821876861089 30.265261286213764 27.481285814832862 50 17.505991103816353 24.711842866383424 26.674873267851495 31.107292761948724 51 17.42734450912842 25.91063353251438 31.55096213850349 25.111059819853704 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5287.0 1 4139.0 2 2991.0 3 2066.0 4 1141.0 5 1060.0 6 979.0 7 1070.0 8 1161.0 9 1350.0 10 1539.0 11 1717.0 12 1895.0 13 2071.5 14 2248.0 15 2232.0 16 2216.0 17 2153.5 18 2091.0 19 2013.5 20 1936.0 21 1922.0 22 1908.0 23 1860.0 24 1812.0 25 1844.0 26 2071.5 27 2267.0 28 2752.5 29 3238.0 30 3746.5 31 4255.0 32 4811.5 33 5368.0 34 5805.0 35 6242.0 36 7348.5 37 8455.0 38 9191.5 39 9928.0 40 11345.0 41 12762.0 42 16898.5 43 21035.0 44 29423.5 45 37812.0 46 39919.0 47 42026.0 48 42699.5 49 43373.0 50 39933.5 51 36494.0 52 31955.0 53 27416.0 54 22831.0 55 18246.0 56 15918.0 57 13590.0 58 11750.5 59 9911.0 60 8785.0 61 7659.0 62 6228.5 63 4798.0 64 3713.0 65 2628.0 66 2101.5 67 1575.0 68 1249.5 69 924.0 70 729.5 71 535.0 72 455.5 73 376.0 74 438.0 75 366.5 76 233.0 77 155.0 78 77.0 79 60.5 80 44.0 81 36.5 82 29.0 83 22.0 84 15.0 85 14.0 86 13.0 87 11.0 88 9.0 89 7.5 90 6.0 91 5.0 92 4.0 93 5.5 94 7.0 95 7.0 96 7.0 97 3.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 350937.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.326290858131806 #Duplication Level Percentage of deduplicated Percentage of total 1 79.47673537672615 33.639554180100845 2 9.386276193813366 7.945725125082056 3 3.3116107278298665 4.205045966251094 4 1.6715787598450562 2.8300691512590843 5 1.0331861680639913 2.186546913003758 6 0.7092330000195948 1.8011521347008865 7 0.5448396445283141 1.6142728885742597 8 0.441057133225881 1.4934650004777945 9 0.3389603538121086 1.2912241072343917 >10 2.703074151705713 23.56986337178366 >50 0.3267413193100358 9.043055132036327 >100 0.045905805192319085 3.622022461251658 >500 0.006075768334277525 1.6555694336140823 >1k 0.004725597593326965 5.1024341346300774 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4564 1.3005183266512224 No Hit CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGCT 3525 1.0044537908513496 No Hit AATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT 2897 0.8255042927932934 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGT 2449 0.6978460521404127 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC 1847 0.5263052912631042 No Hit AAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT 1463 0.4168839421320636 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1112 0.31686599019197176 No Hit AAAAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTT 957 0.27269851853751526 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 768 0.21884269826208122 No Hit AATGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTT 660 0.18806794381897607 No Hit AATGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTC 621 0.17695483804785475 No Hit CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC 619 0.17638493518779724 No Hit AACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG 577 0.16441697512658968 No Hit AATGATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT 535 0.1524490150653821 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT 533 0.1518791122053246 No Hit TACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT 524 0.14931454933506585 No Hit AACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT 490 0.1396262007140883 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 490 0.1396262007140883 No Hit ACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTG 452 0.12879804637299572 No Hit AGCCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCT 369 0.10514707768060935 No Hit GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTTCTGC 354 0.10087280623017807 No Hit GAAAAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT 354 0.10087280623017807 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.849514300287516E-4 0.0 0.0 1.250366874966162 0.0 2 2.849514300287516E-4 0.0 0.0 1.7681236233284037 0.0 3 2.849514300287516E-4 0.0 0.0 2.538917241556177 0.0 4 2.849514300287516E-4 0.0 0.0 6.40257368131602 0.0 5 2.849514300287516E-4 0.0 0.0 7.059101776102263 0.0 6 2.849514300287516E-4 0.0 0.0 9.560975331754703 0.0 7 2.849514300287516E-4 0.0 0.0 11.473854281537712 0.0 8 2.849514300287516E-4 0.0 0.0 12.572626995728578 0.0 9 2.849514300287516E-4 0.0 0.0 15.035462205467079 0.0 10 2.849514300287516E-4 0.0 0.0 17.682945941864208 0.0 11 2.849514300287516E-4 0.0 0.0 20.801454392098865 0.0 12 2.849514300287516E-4 0.0 0.0 22.184893584888457 0.0 13 2.849514300287516E-4 0.0 0.0 22.75736100781622 0.0 14 2.849514300287516E-4 0.0 0.0 23.383114348159356 0.0 15 2.849514300287516E-4 0.0 0.0 23.840461393355504 0.0 16 2.849514300287516E-4 0.0 0.0 24.678218597640033 0.0 17 2.849514300287516E-4 0.0 0.0 25.759039371739085 0.0 18 2.849514300287516E-4 0.0 0.0 27.082353812792608 0.0 19 2.849514300287516E-4 0.0 0.0 27.67533773868244 0.0 20 2.849514300287516E-4 0.0 0.0 28.3062202047661 0.0 21 2.849514300287516E-4 0.0 0.0 29.05706722289186 0.0 22 2.849514300287516E-4 0.0 0.0 29.8275758896896 0.0 23 2.849514300287516E-4 0.0 0.0 30.520292816089498 0.0 24 2.849514300287516E-4 0.0 0.0 31.04716801021266 0.0 25 2.849514300287516E-4 0.0 0.0 31.475450009545874 0.0 26 2.849514300287516E-4 0.0 0.0 31.92310870612104 0.0 27 2.849514300287516E-4 0.0 0.0 32.43915574590311 0.0 28 2.849514300287516E-4 0.0 0.0 32.89279842250888 0.0 29 2.849514300287516E-4 0.0 0.0 33.426512450952735 0.0 30 2.849514300287516E-4 0.0 0.0 34.04428715125507 0.0 31 2.849514300287516E-4 0.0 0.0 34.497929827860844 0.0 32 2.849514300287516E-4 0.0 0.0 34.92991619578443 0.0 33 2.849514300287516E-4 0.0 0.0 35.3607627579879 0.0 34 2.849514300287516E-4 0.0 0.0 35.871680672029456 0.0 35 2.849514300287516E-4 0.0 0.0 36.35752286022847 0.0 36 2.849514300287516E-4 0.0 0.0 36.79007913101212 0.0 37 2.849514300287516E-4 0.0 0.0 37.21921598463542 0.0 38 2.849514300287516E-4 0.0 0.0 37.67798778698171 0.0 39 2.849514300287516E-4 0.0 0.0 38.321978018846686 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCGC 25 3.885248E-5 45.000004 25 ACTATTC 25 3.885248E-5 45.000004 28 CATATAG 25 3.885248E-5 45.000004 1 TCCGCAG 25 3.885248E-5 45.000004 1 CTATCGG 25 3.885248E-5 45.000004 2 CTATCCA 25 3.885248E-5 45.000004 41 ATGTGCG 25 3.885248E-5 45.000004 20 TAGCGAT 25 3.885248E-5 45.000004 45 GGCAACG 25 3.885248E-5 45.000004 1 TCTTACG 25 3.885248E-5 45.000004 1 CCGTGGC 25 3.885248E-5 45.000004 20 TAAACGG 25 3.885248E-5 45.000004 2 CCGTGCA 25 3.885248E-5 45.000004 26 CGATTAC 25 3.885248E-5 45.000004 38 CCGCTAG 25 3.885248E-5 45.000004 1 CCGTAGT 25 3.885248E-5 45.000004 27 GTTCGCT 25 3.885248E-5 45.000004 19 CGTAGTG 25 3.885248E-5 45.000004 28 TCTCGGT 25 3.885248E-5 45.000004 43 TCCACGA 25 3.885248E-5 45.000004 34 >>END_MODULE