##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553021_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 313472 Sequences flagged as poor quality 0 Sequence length 46 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.108408406492448 31.0 31.0 34.0 28.0 34.0 2 31.33481140261331 31.0 31.0 34.0 28.0 34.0 3 31.600771360759495 31.0 31.0 34.0 30.0 34.0 4 35.51278583095141 37.0 35.0 37.0 33.0 37.0 5 34.93252028889343 35.0 35.0 37.0 32.0 37.0 6 34.983000076561865 35.0 35.0 37.0 32.0 37.0 7 34.741750459371175 35.0 35.0 37.0 32.0 37.0 8 35.36366884442629 37.0 35.0 37.0 33.0 37.0 9 36.759187423438135 39.0 37.0 39.0 32.0 39.0 10 36.245447759289505 38.0 35.0 39.0 32.0 39.0 11 36.47719732543896 38.0 35.0 39.0 32.0 39.0 12 36.09626378113516 37.0 35.0 39.0 32.0 39.0 13 35.66910282258065 37.0 35.0 39.0 30.0 39.0 14 36.66018017558187 38.0 35.0 40.0 31.0 41.0 15 36.68312959371172 38.0 35.0 40.0 31.0 41.0 16 36.71839271131074 38.0 35.0 40.0 31.0 41.0 17 36.66727809820335 38.0 35.0 40.0 32.0 41.0 18 36.52133842895059 38.0 35.0 40.0 31.0 41.0 19 36.46638934258881 38.0 35.0 40.0 31.0 41.0 20 36.3513232441813 38.0 35.0 40.0 30.0 41.0 21 36.48165386382197 38.0 35.0 40.0 31.0 41.0 22 36.48297136586362 38.0 35.0 40.0 31.0 41.0 23 36.329244717231525 38.0 35.0 40.0 31.0 41.0 24 35.78112239689669 38.0 34.0 40.0 29.0 41.0 25 36.01746567476521 38.0 34.0 40.0 30.0 41.0 26 35.99111563393222 38.0 34.0 40.0 30.0 41.0 27 35.78971646590445 38.0 34.0 40.0 30.0 41.0 28 35.88512849632503 38.0 34.0 40.0 30.0 41.0 29 35.52576306655778 38.0 34.0 40.0 29.0 41.0 30 35.58266767047775 38.0 34.0 40.0 29.0 41.0 31 35.45646501122907 38.0 34.0 40.0 29.0 41.0 32 35.3113388117599 38.0 34.0 40.0 27.0 41.0 33 35.3206251276031 38.0 34.0 40.0 28.0 41.0 34 35.21399997447938 38.0 34.0 40.0 27.0 41.0 35 35.06408227848101 38.0 34.0 40.0 27.0 41.0 36 35.16749502347897 38.0 34.0 40.0 27.0 41.0 37 34.92109981114741 38.0 34.0 40.0 25.0 41.0 38 34.88491157104941 37.0 34.0 40.0 25.0 41.0 39 34.789362367292775 37.0 34.0 40.0 25.0 41.0 40 34.52724964271131 37.0 33.0 40.0 24.0 41.0 41 34.56359738668844 37.0 33.0 40.0 24.0 41.0 42 34.47008026235198 37.0 33.0 40.0 24.0 41.0 43 34.462047646998776 37.0 33.0 40.0 24.0 41.0 44 34.46539084830543 37.0 33.0 40.0 24.0 41.0 45 34.29527358105349 37.0 33.0 40.0 23.0 41.0 46 33.2042670477746 35.0 32.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 2.0 10 4.0 11 3.0 12 8.0 13 10.0 14 9.0 15 31.0 16 43.0 17 92.0 18 170.0 19 349.0 20 587.0 21 1053.0 22 1548.0 23 2182.0 24 2666.0 25 3231.0 26 3739.0 27 4280.0 28 4882.0 29 6161.0 30 7885.0 31 10272.0 32 13838.0 33 19168.0 34 29669.0 35 36452.0 36 34869.0 37 46015.0 38 54573.0 39 29680.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.406517966516944 34.998660167415274 19.65693905675786 25.93788280930992 2 18.48139546753777 37.17429307880767 19.66906135157207 24.675250102082483 3 19.048591261739485 34.69911188240098 21.864791751735403 24.387505104124134 4 18.705338913842382 34.545669150673746 19.160562984891794 27.588428950592082 5 15.790246018783177 37.40940179665169 19.99094017966517 26.809412004899958 6 20.172774601878317 36.50310075541037 21.667644957125358 21.656479685585953 7 73.98204624336464 11.07531135157207 8.896807370355248 6.045835034708044 8 76.01795375663536 8.961884953042059 6.213952123315639 8.80620916700694 9 70.28155624744794 12.021807370355248 12.027549510004084 5.669086872192731 10 34.670720191915066 36.66643272764394 12.714373213556554 15.948473866884443 11 27.646488362596976 26.207763372805225 30.137938954675374 16.007809309922415 12 28.30460136790527 24.872715904450796 31.576663944467132 15.246018783176806 13 22.609355859534507 35.902728154348715 24.101036137198857 17.386879848917925 14 13.584945385871785 37.03807676602695 32.05070947325439 17.326268374846876 15 12.726495508370764 33.06643017558187 34.45188086974275 19.755193446304613 16 15.00070181706819 30.923017047774604 32.11706308697428 21.959218048182933 17 15.293231931400571 30.661749693752554 26.784529399755 27.260488975091874 18 18.813801551653736 29.468660677827685 26.83620865659453 24.88132911392405 19 19.72488770926909 36.14900214373213 26.239345140873827 17.88676500612495 20 19.55358054307881 33.84512811351572 26.012530624744794 20.58876071866068 21 16.52204981625153 33.513041037158025 26.328986320947322 23.635922825643117 22 16.044176194365047 33.49358156390363 26.89171600653328 23.570526235198038 23 17.773517251939566 33.08716567986934 22.478243670886076 26.661073397305024 24 14.691583299305838 35.51226265822785 26.657564311964066 23.138589730502247 25 16.583618313597388 32.077825132707225 25.541356165781952 25.79720038791343 26 18.75733717844018 35.25673744385463 23.402409146590443 22.583516231114743 27 13.277421906900777 33.12799867292773 26.14715189873418 27.447427521437323 28 17.227375969783584 29.20579828501429 28.706232135565536 24.860593609636584 29 16.036839015924865 30.626977848101266 29.38061453654553 23.955568599428336 30 17.723433033891382 30.801156084115966 24.642711310739077 26.83269957125357 31 19.98105093915884 31.7572223356472 24.698537668436096 23.56318905675786 32 20.890861065741117 29.883370763576973 21.390108207431606 27.835659963250308 33 18.804550326663943 28.476865557370356 27.644574316047365 25.074009799918333 34 15.002615863617802 27.573435585953447 25.88014240506329 31.543806145365455 35 15.009315026541445 30.94981369946917 26.784210391996734 27.25666088199265 36 18.77360657411188 24.91514393630053 32.169699367088604 24.141550122498977 37 15.113630563495303 31.904284912209064 25.271794610044918 27.710289914250712 38 18.610912617394856 29.038319211923238 28.340330236831356 24.01043793385055 39 17.589768783176808 27.191583299305837 28.761420477746018 26.457227439771337 40 20.72370100040833 29.470574724377297 23.859228256431198 25.946496018783176 41 16.085328195181706 25.367177929767255 30.03266639444671 28.51482748060433 42 20.99964271131074 29.144229787668436 24.311262249897915 25.544865251122907 43 17.5195870763577 26.728703042057983 29.127322376480198 26.624387505104124 44 20.40947835851368 25.349313495304205 25.895773785218456 28.345434360963655 45 21.208273785218456 29.12955543078808 24.78498877092691 24.877182013066555 46 16.387428542262146 27.697210596161696 31.45033687219273 24.465023989383422 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 6027.0 1 4692.0 2 3357.0 3 2332.0 4 1307.0 5 1403.0 6 1499.0 7 1499.0 8 1511.5 9 1524.0 10 1581.5 11 1639.0 12 1712.0 13 1785.0 14 1880.5 15 1976.0 16 1937.5 17 1899.0 18 1871.5 19 1844.0 20 1844.0 21 1783.5 22 1723.0 23 1785.0 24 1847.0 25 1935.0 26 2023.0 27 2086.0 28 2149.0 29 2599.0 30 3049.0 31 3049.0 32 3898.5 33 4748.0 34 5309.0 35 5870.0 36 7313.5 37 8757.0 38 8751.5 39 8746.0 40 12304.5 41 15863.0 42 18555.0 43 21247.0 44 21247.0 45 29182.0 46 37117.0 47 41883.0 48 46649.0 49 43426.5 50 40204.0 51 33878.5 52 27553.0 53 23384.5 54 19216.0 55 16471.5 56 13727.0 57 13727.0 58 12246.5 59 10766.0 60 9398.5 61 8031.0 62 6391.5 63 4752.0 64 3726.0 65 2700.0 66 2147.5 67 1595.0 68 1252.5 69 910.0 70 910.0 71 678.0 72 446.0 73 405.0 74 364.0 75 274.5 76 185.0 77 211.5 78 238.0 79 151.5 80 65.0 81 65.0 82 51.0 83 37.0 84 27.5 85 18.0 86 11.0 87 4.0 88 4.0 89 4.0 90 5.5 91 7.0 92 4.5 93 2.0 94 2.0 95 2.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 313472.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.69557584666936 #Duplication Level Percentage of deduplicated Percentage of total 1 77.13373621311096 30.618680761845336 2 10.071392303004751 7.995794340909741 3 3.621934103830899 4.313242797907736 4 1.9552323539159244 3.104562968109258 5 1.2131697705703939 2.4078736321281764 6 0.8873187397939417 2.1133577001396895 7 0.6468365396201938 1.7973584243223386 8 0.5330960277050936 1.6929243041060555 9 0.37582527083038936 1.3426740489008497 >10 3.2170875904348923 26.161580522982252 >50 0.27420648628117955 6.837565431062273 >100 0.056454276587301684 4.147422987143541 >500 0.00806489665532881 2.0111239834222867 >1k 0.004838937993197286 3.764534689758464 >5k 8.064896655328813E-4 1.691303407262009 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5283 1.6853179869334423 No Hit CTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCTT 3626 1.1567221314822378 No Hit AATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGT 2249 0.7174484483462638 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTAT 1881 0.6000535933033891 No Hit AAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGT 1389 0.4431017762351981 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGT 1351 0.43097948142098813 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1263 0.4029067986933442 No Hit AAAAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC 954 0.30433340138832177 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 857 0.2733896488362597 No Hit CCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT 804 0.2564822376480196 No Hit TACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGT 544 0.17354022049816253 No Hit ACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTC 540 0.17226418946508779 No Hit AACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTC 537 0.17130716619028175 No Hit AATGCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCG 515 0.16428899550837076 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 512 0.16333197223356472 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC 511 0.16301296447529603 No Hit AATGACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCC 508 0.16205594120049 No Hit TACATTGGGGTTGTTTCTGTTGCTGTTGCTCTTGTTGTTTTATATA 471 0.1502526541445488 No Hit AACCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGT 431 0.13749234381380154 No Hit GCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT 396 0.1263270722743977 No Hit AATGATCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC 390 0.12441302572478563 No Hit GGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 368 0.11739485504287464 No Hit TCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGTCT 367 0.11707584728460596 No Hit GAAAAACTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGC 359 0.11452378521845652 No Hit AGCCTGTCTCTTATACACATCTGACGCCTCTCTCATCGTATGCCGT 334 0.10654859126173948 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2578475908534095 0.0 2 0.0 0.0 0.0 1.8923540220498163 0.0 3 0.0 0.0 0.0 2.746656798693344 0.0 4 0.0 0.0 0.0 6.653225806451613 0.0 5 0.0 0.0 0.0 7.304958656594528 0.0 6 0.0 0.0 0.0 9.90231982441813 0.0 7 0.0 0.0 0.0 11.821789505920783 0.0 8 0.0 0.0 0.0 12.951714985708453 0.0 9 0.0 0.0 0.0 15.360861576153532 0.0 10 0.0 0.0 0.0 18.066366374030217 0.0 11 0.0 0.0 0.0 21.208273785218456 0.0 12 0.0 0.0 0.0 22.62722029399755 0.0 13 0.0 0.0 0.0 23.20302929767252 0.0 14 0.0 0.0 0.0 23.81999030216415 0.0 15 0.0 0.0 0.0 24.272981318905675 0.0 16 0.0 0.0 0.0 25.139725398121683 0.0 17 0.0 0.0 0.0 26.268055839118006 0.0 18 0.0 0.0 0.0 27.680941200489997 0.0 19 0.0 0.0 0.0 28.317042670477747 0.0 20 0.0 0.0 0.0 28.942935892200897 0.0 21 0.0 0.0 0.0 29.68494793793385 0.0 22 0.0 0.0 0.0 30.499055737035526 0.0 23 0.0 0.0 0.0 31.245852899142506 0.0 24 0.0 0.0 0.0 31.785933033891386 0.0 25 0.0 0.0 0.0 32.263168640261334 0.0 26 0.0 0.0 0.0 32.75220753368722 0.0 27 0.0 0.0 0.0 33.268681094324215 0.0 28 0.0 0.0 0.0 33.70731676194365 0.0 29 0.0 0.0 0.0 34.24452582686811 0.0 30 0.0 0.0 0.0 34.84872652102899 0.0 31 0.0 0.0 0.0 35.34031747652103 0.0 32 0.0 0.0 0.0 35.76587382605145 0.0 33 0.0 0.0 0.0 36.20769957125357 0.0 34 0.0 0.0 0.0 36.721621069824415 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAT 25 7.781669E-5 40.000004 30 TCGTTGA 25 7.781669E-5 40.000004 24 TGGGTGA 25 7.781669E-5 40.000004 5 CGTTGAT 25 7.781669E-5 40.000004 25 ATTAACG 25 7.781669E-5 40.000004 1 TTCAACT 25 7.781669E-5 40.000004 24 CGCGATG 25 7.781669E-5 40.000004 1 GTAGGGC 50 7.6397555E-11 40.000004 4 AAGCGGT 25 7.781669E-5 40.000004 27 TCGATCA 25 7.781669E-5 40.000004 17 GGCCCAC 25 7.781669E-5 40.000004 27 ATCGTTG 25 7.781669E-5 40.000004 23 CATTATG 25 7.781669E-5 40.000004 1 TGCATCG 25 7.781669E-5 40.000004 23 CCACTAG 25 7.781669E-5 40.000004 1 TCTCGAG 25 7.781669E-5 40.000004 1 GAAAACG 25 7.781669E-5 40.000004 1 GGGCCTA 25 7.781669E-5 40.000004 7 CTCGATC 25 7.781669E-5 40.000004 16 CTCGAGG 50 7.6397555E-11 40.000004 2 >>END_MODULE