SRR3553020_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553020_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	805063
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	5723	0.7108760432413365	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCC	4339	0.5389640313863636	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGT	4232	0.5256731460767666	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4042	0.5020725086111274	No Hit
CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT	3031	0.37649227451764644	No Hit
AACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTG	1091	0.13551734460532902	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTT	1004	0.12471073692369417	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	911	0.1131588459536707	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCT	860	0.10682393800236752	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.0320256E-4	45.0	1
CGAACGC	20	7.0320256E-4	45.0	22
CATGCGT	20	7.0320256E-4	45.0	25
ATTCGGC	25	3.8897604E-5	45.0	17
TTCGTAA	25	3.8897604E-5	45.0	18
TCGATTG	20	7.0320256E-4	45.0	13
TAACGCG	90	0.0	45.0	1
GCGCACA	20	7.0320256E-4	45.0	31
CGCCTAT	20	7.0320256E-4	45.0	32
CATAGCG	20	7.0320256E-4	45.0	1
CGTAGGT	20	7.0320256E-4	45.0	15
TCGTAAT	25	3.8897604E-5	45.0	19
CGTAATT	25	3.8897604E-5	45.0	20
ACGTACG	20	7.0320256E-4	45.0	1
CGCACGT	20	7.0320256E-4	45.0	22
CGCACAT	20	7.0320256E-4	45.0	32
CACGTTA	25	3.8897604E-5	45.0	37
CGACTAT	25	3.8897604E-5	45.0	3
CGCAACA	20	7.0320256E-4	45.0	31
TTCGATC	45	3.8380676E-10	45.0	13