SRR3553018_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553018_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	806683
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4228	0.5241216190250694	No Hit
CTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCTGCT	2584	0.320324092611348	No Hit
AATCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	2050	0.25412708585652605	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCC	1765	0.21879722270086266	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGT	1746	0.21644189849048512	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1109	0.13747655522677432	No Hit
AAACTGTCTCTTATACACATCTGACGCATCACGCATCGTATGCCGTCTTCT	896	0.11107213118412065	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	20	7.0320343E-4	45.0	15
CGAACAG	45	3.8380676E-10	45.0	1
CGTATAG	25	3.8897677E-5	45.0	1
ATCTACG	45	3.8380676E-10	45.0	1
CAACGGT	20	7.0320343E-4	45.0	39
CCGTGAC	20	7.0320343E-4	45.0	22
TCGGAAC	20	7.0320343E-4	45.0	15
TATCTCG	20	7.0320343E-4	45.0	1
GTTCGAC	20	7.0320343E-4	45.0	32
CGGATAC	20	7.0320343E-4	45.0	35
TCGCTAG	20	7.0320343E-4	45.0	1
TTGCGAT	20	7.0320343E-4	45.0	19
CTCGCTA	20	7.0320343E-4	45.0	31
CTCGAAT	20	7.0320343E-4	45.0	11
ACGTATA	20	7.0320343E-4	45.0	33
ATCGGAC	20	7.0320343E-4	45.0	39
ACTCACG	35	1.2113196E-7	45.0	1
TCGCGAC	20	7.0320343E-4	45.0	16
ACGTTGC	30	2.1646938E-6	44.999996	44
TAGTTGC	30	2.1646938E-6	44.999996	14