SRR3553016_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553016_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	588685
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGT	18582	3.1565268352344633	No Hit
AATCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCT	16477	2.798950202570135	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCC	14679	2.493523701130486	No Hit
CTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTGCT	6828	1.1598732768798252	TruSeq Adapter, Index 16 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4767	0.8097709301239202	No Hit
AATGACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTT	4234	0.7192301485514324	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCT	3214	0.5459626115834445	No Hit
AACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCTG	3030	0.5147065068754937	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTAT	2013	0.3419485803103527	No Hit
AAACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTCT	1741	0.29574390378555593	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1184	0.20112623899029192	No Hit
AATGCTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTTC	1165	0.19789870643892746	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTGACCTTTCGTATGCCGTCTT	1055	0.17921299166786991	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	919	0.15611065340547153	No Hit
AATGATACCTGTCTCTTCTACACATCTGACGCCTGACCTTTCGTATGCCGT	770	0.1308000033974027	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTGACCTTTC	648	0.11007584701495707	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGT	20	7.030479E-4	45.0	36
TCCGCGA	20	7.030479E-4	45.0	2
CGAGTTA	25	3.888479E-5	45.0	17
ATAATCG	20	7.030479E-4	45.0	16
CGTTGCC	25	3.888479E-5	45.0	17
ATAGCTA	25	3.888479E-5	45.0	30
TAAACGG	55	1.8189894E-12	45.0	2
TAAACCG	55	1.8189894E-12	45.0	1
TGTATCG	20	7.030479E-4	45.0	21
CGACAGA	20	7.030479E-4	45.0	23
AAGCGAA	20	7.030479E-4	45.0	20
TACGGAA	20	7.030479E-4	45.0	4
CGCGAAC	20	7.030479E-4	45.0	23
ATCACCG	40	6.8048394E-9	45.0	1
TAGCCGT	45	3.8380676E-10	45.0	44
TAGCCCG	25	3.888479E-5	45.0	22
TCGGCGC	20	7.030479E-4	45.0	26
CGTTAGC	25	3.888479E-5	45.0	40
CGTTAAG	25	3.888479E-5	45.0	1
CCGTATA	20	7.030479E-4	45.0	38