SRR3553007_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553007_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	884980
Sequences flagged as poor quality	0
Sequence length	46
%GC	35

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	73724	8.33058374200547	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	18264	2.0637754525526	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13874	1.567719044498181	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	8817	0.9962937015525775	No Hit
GCACAAGGGGGATTTTTTTAAAATAAGTAAATTTCTTATTGACGGC	1823	0.20599335578205158	No Hit
TTCACTGGGAACAATAATTTTTTTTAATCTAAGTATAGGTAATATA	1718	0.19412868087414406	No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1613	0.18226400596623651	No Hit
TGCTTTATTTCCTGAAGGCATATTTAGATCAAATCTATCAATCTCT	1567	0.17706614838753418	No Hit
GAAGATGGGAGTTTTAATTTTCTCTTATTGACTTTTGCATCTTTAG	1504	0.16994734344278967	No Hit
CATAGCGGCAAGATTTTTTTATTTCCCTCATTTCCTTCAATACTTC	1370	0.15480575832222196	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1350	0.1525458202445253	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1345	0.15198083572510115	No Hit
ATCGAGGGGGGATTGATTGTTTTTCGTGTAATGAATTCTGTTAACT	1308	0.1477999502813623	No Hit
AGACGAGGACGTGAAGGATAACTGGGATGATGATGATGATGAAAAT	1244	0.14056814843273296	No Hit
ATTCTGGGGATTTTTAGTTTTTATGGGGATTTTTAGATGTGAAGAA	1172	0.13243237135302494	No Hit
CAGCTAGGGATACAAATGTTAGCTTTTGAAAGTAATTGAAATAATG	1154	0.13039842708309793	No Hit
TAGGGGGAGCGGGTCTACATGAATTATTTGCGATTGGTAATTATGT	1134	0.12813848900540126	No Hit
AGCTCTGGGCTGTCTGTTATAAACGATTTTATTATAGTTGTTTATT	1129	0.1275735044859771	No Hit
ATACAGGGAAAATGTGGGCCAAAAATTTGTTGCATCTTTTCATATA	1114	0.12587855092770459	No Hit
CATCATGGGCTACTATTTAAATATTTTCATTTTATTGTGACTTTGT	1111	0.1255395602160501	No Hit
AGAAACGGAAGAAAGGAAAGGAAAGAAAGAAATAAAAGAAAGAAAG	1105	0.12486157879274108	No Hit
TTGTGAGGGAAAAATTTAATGATTGTATATGAAGATTTTAATGACT	1090	0.12316662523446857	No Hit
TTTGTAGGGACTGTATTATTTGTATATAAATATGAACTATAGTTTT	1090	0.12316662523446857	No Hit
GGCTTGCAGAATTCTTTCTTACTTAATTTTCATTGTAAATTTCCCC	1073	0.1212456778684264	No Hit
GTGCAAAGGGATCTTCAATTTCTTAACTTTGGTATTAATAAACTTT	1069	0.12079369025288708	No Hit
ATAACCGGGAATGTAACATTGAGTTAGTTTGTGTTACTCTGTGTTT	1068	0.12068069334900224	No Hit
GCACTACTTCTGATTTTTGCAGTGTTCAGTCCTAGTTTTTCTTTAT	1028	0.1161608171936089	No Hit
ACGTATGGGACAGATAGTTTTTTTGTTTACGATTTATGACAGGTTT	989	0.11175393794210038	No Hit
GCAGTATGGGATTTCTAAAAATAATGTTAAGAATTTTTGCTGGTTT	978	0.11051097199936723	No Hit
CGAGCAGGAGCACTTTACTAAAGTCTCTTTACATTCTCATATAGAA	973	0.10994598747994305	No Hit
TATCTTGGGGAGATTCCTGAATTCATTCGGTTCATTGATGTTATAA	949	0.10723406178670704	No Hit
ATCAACGGGAAAATAAATAAATAAATAAATCTTTTTTTAAAATTAC	921	0.1040701484779317	No Hit
CAGCGAAGGGATGGATTTTGTTAAACAAATTTAAGGGATGATCAAT	919	0.10384415467016203	No Hit
AGATATGGGAGCAGGTGGATTATTGTCAGTGTGTTTATATGTATAT	912	0.1030531763429682	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	906	0.1023751949196592	No Hit
GATGAGGGGGAGAAGAAGGAAGAAGAGGAGAAGAAGGAAGAAGAGG	902	0.10192320730411987	No Hit
GTAAACGGGAGATAATGTTGGATATATTTAGATTTTGCCAAGGGCT	894	0.10101923207304118	No Hit
GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	891	0.10068024136138669	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAA	55	5.456968E-12	40.000004	13
ACTAGCT	55	5.456968E-12	40.000004	40
TCGTAAA	55	5.456968E-12	40.000004	14
TCACGCG	35	3.05532E-7	40.0	1
CGGAATA	80	0.0	40.0	19
AAGTACG	25	7.7931996E-5	40.0	1
TCGTTGA	40	1.9274012E-8	40.0	24
CGAACTG	40	1.9274012E-8	40.0	1
AAATCCG	40	1.9274012E-8	40.0	1
CGTATCG	20	0.0012556121	40.0	1
ATTAGCG	90	0.0	40.0	1
AATCACG	20	0.0012556121	40.0	1
GTCGAGC	20	0.0012556121	40.0	7
GGTCGAG	20	0.0012556121	40.0	6
GCGAATC	25	7.7931996E-5	40.0	28
TCCGATC	45	1.2205419E-9	40.0	10
TTTCGCC	20	0.0012556121	40.0	29
CATGAGT	20	0.0012556121	40.0	16
CGTTGAT	40	1.9274012E-8	40.0	25
GGCAACG	50	7.8216544E-11	40.0	1

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content